Locus 5825

Sequence ID 2L_DroMel_CAF1
Location 16,519,355 – 16,519,458
Length 103
Max. P 0.775220
window9246

overview

Window 6

Location 16,519,355 – 16,519,458
Length 103
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -18.95
Consensus MFE -12.35
Energy contribution -14.22
Covariance contribution 1.87
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.65
SVM decision value 0.54
SVM RNA-class probability 0.775220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16519355 103 + 22407834
GCUUGAUACUCGGCUACUGCUACAACAACAGUAGGAAAACACAAACAAGAGAAAACUACACUCGAA-AACACAUUGCCGAGAAACGAGUCAAGUUCAAGCUGUC
((((((..((((((..(((((........)))))..............(((.........)))...-........))))))..((.......)))))))).... ( -23.30)
>DroSec_CAF1 31158 103 + 1
GCUGGAUACUCGGCUACUGCUACAACAACAGUAGGA-AACACAAACAAGAGAAAACUACACUCGAAAAACACAUUUCCGAGAAACGAGUCAAGUUCAAGCUGUC
((((((((((((.((((((.........))))))..-.......................((((.(((.....))).))))...)))))...)))).))).... ( -21.20)
>DroEre_CAF1 36738 86 + 1
GCUUGAUGCGCGGCUACUGCCACAACAACAGUAGGA-AACACAAACAAGAGAAAACUACACUCGAAAA--------------AACUAGUCAGCUUCAAUAU---
..((((.(((.(((....))).)......(((.(..-..)........(((.........))).....--------------.))).....)).))))...--- ( -14.20)
>DroYak_CAF1 24824 87 + 1
GCUUGAUACUCGGCUACUGCUACAACAACAGUAGGA-AACACAAACAAGAGAAAACUACACUCGAAAA--------------AA--AGGCAACUUCAAGCUGGC
((((((..((((((....))).........((.(..-..)))......))).................--------------..--((....)))))))).... ( -17.10)
>consensus
GCUUGAUACUCGGCUACUGCUACAACAACAGUAGGA_AACACAAACAAGAGAAAACUACACUCGAAAA______________AACGAGUCAACUUCAAGCUGUC
((((((.(((((.((((((.........))))))..............(((.........))).....................))))).....)))))).... (-12.35 = -14.22 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:57 2006