Locus 5823

Sequence ID 2L_DroMel_CAF1
Location 16,497,375 – 16,497,490
Length 115
Max. P 0.941007
window9243

overview

Window 3

Location 16,497,375 – 16,497,490
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 90.26
Mean single sequence MFE -30.62
Consensus MFE -22.72
Energy contribution -23.32
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -2.66
Structure conservation index 0.74
SVM decision value 1.31
SVM RNA-class probability 0.941007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16497375 115 - 22407834
UGUUUGCAUCUCUGAUUACUAAACACAAUUAAAGAUAGAUGUAAACAGCAGAUGUAAUUUCUGCAGUGAAAACAACUUUGUUGCAUGCACUGUGCCUGCUGCUGCAGUAAGAGAG
...(((((((((((.((((.....................)))).))).))))))))(((((((((((....((((...))))....))))))..((((....))))..))))). ( -30.70)
>DroSec_CAF1 16306 112 - 1
UGUUUGCAUCUCUCAUUACUAAACAAAAUUAAAGAUAGAUGUAAUCAGCAGAUGUAAUUUCUGCAGUGAAAACUACUUUGUUGCAUGCACUGUGCCCGC---UGCAGCAAGAGAG
((.((((((((.((.(((...........))).)).)))))))).))(((((.......)))))(((....))).((((.((((.((((.((....)).---)))))))).)))) ( -30.40)
>DroSim_CAF1 9833 112 - 1
UGUUUGCAUCUCUCAUUACUAAACAAAAUUAAAGAUAGAUGUAAUCAGCAGAUGUAAUUUCUGCAGUGAAAACUACUUUGUUGCAUGCACUGUGCCCGC---UGCAGCAAGAGAG
((.((((((((.((.(((...........))).)).)))))))).))(((((.......)))))(((....))).((((.((((.((((.((....)).---)))))))).)))) ( -30.40)
>DroEre_CAF1 22030 109 - 1
UGUUUGCAUCUCUCAAUAUUAAACACAAUUACAGAUGCAUGUGAGCAGCAGAUGAAAUUUCUGCUGUGAAAACUACUUUGUUGCAUGCACUGUGCU------UGCAGCAAGAGAG
.........(((((................((((.(((((((..((((((((.......))))))))...(((......))))))))))))))((.------....))..))))) ( -34.50)
>DroYak_CAF1 10191 109 - 1
UGUUUGCACCUCUUAUUAUUAAACAAAAUUAAAGAUAGAAGUAAUCAGCAGAUGUAAUUUCUGCAGUGAAAACUACUUUGUUGCAUGCACUGUGCC------UGCAGCCAGAGAG
.((((.(((((..((((.((((......)))).))))..))......(((((.......))))).))).))))..((((((((((.((.....)).------))))).))))).. ( -27.10)
>consensus
UGUUUGCAUCUCUCAUUACUAAACAAAAUUAAAGAUAGAUGUAAUCAGCAGAUGUAAUUUCUGCAGUGAAAACUACUUUGUUGCAUGCACUGUGCC_GC___UGCAGCAAGAGAG
((.((((((((.((.(((...........))).)).)))))))).))(((((.......))))).((....))..((((.((((.((((.............)))))))).)))) (-22.72 = -23.32 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:54 2006