Locus 5822

Sequence ID 2L_DroMel_CAF1
Location 16,495,639 – 16,495,742
Length 103
Max. P 0.949937
window9242

overview

Window 2

Location 16,495,639 – 16,495,742
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.78
Mean single sequence MFE -27.05
Consensus MFE -14.74
Energy contribution -14.93
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -2.62
Structure conservation index 0.54
SVM decision value 1.40
SVM RNA-class probability 0.949937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16495639 103 + 22407834
----ACACAU--------GGAAUUAAUGGGUCGGACAACGACCCAAAACUGUGG-AACAUAAAUUCAAUUGAGGCAAGUGUCAAUAGAACACGAG--C--UCAUCCAUUUGUAAGUGUUC
----(((.((--------(((.....(((((((.....))))))).........-..............((((.(..(((((....).))))..)--)--)))))))).)))........ ( -28.00)
>DroPse_CAF1 8318 99 + 1
-------------------GCAAUAAUGGGUCGGACAACGACCCAAAACUGGGGCCUCAUAAAUUCAAUUGAGGCAAGUGUCAAUAGAACACGAGAAC--UCAUCCAUAUGCAAGCAUUC
-------------------(((....(((((((.....)))))))....((((((((((..........))))))..(((((....).)))).....)--)))......)))........ ( -31.90)
>DroEre_CAF1 20365 100 + 1
------ACAU--------CGAA-UAAUGGGUCGGACAACGACCCAGAAGUGGGG-AACAUAAAUUCAAUUGAAGCAAGUGUCAAUAGAACACGAG--C--UCAUCCAUUUGCAAGUGUUC
------....--------.(((-((.(((((((.....))))))).((((((((-((......)))...(((.((..(((((....).))))..)--)--)))))))))).....))))) ( -28.30)
>DroWil_CAF1 62091 104 + 1
UAGUAUCCAA---------GUAAUAAUGGUUCGAGCAAUGACCCAAAACUCGUA-AACAUAAAUUCAAUUGAAGCAAGUGUCAAUAGAACACGAA--C--UCUUCCAUUU-UACAUGUU-
..........---------((((.(((((...(((..((((........)))).-........(((.(((((........))))).)))......--)--))..))))))-))).....- ( -14.00)
>DroAna_CAF1 14757 112 + 1
------GCAUGCCGAGAGAGAAAUAAUAGGUCGGACAACGACCCAAAACUGGGGGGCCAUAAAUUCAAUUGAAGCAAGUGUCAAUAGAACACGAA--CUCUCAUCCAUAUGCAAGUUUUU
------(((((..(((((((........(((((.....)..((((....)))).)))).....(((.(((((........))))).)))......--))))).))..)))))........ ( -28.20)
>DroPer_CAF1 8421 99 + 1
-------------------GCAAUAAUGGGUCGGACAACGACCCAAAACUGGGGCCUCAUAAAUUCAAUUGAGGCAAGUGUCAAUAGAACACGAGAAC--UCAUCCAUAUGCAAGCAUUC
-------------------(((....(((((((.....)))))))....((((((((((..........))))))..(((((....).)))).....)--)))......)))........ ( -31.90)
>consensus
_______CAU_________GAAAUAAUGGGUCGGACAACGACCCAAAACUGGGG_AACAUAAAUUCAAUUGAAGCAAGUGUCAAUAGAACACGAG__C__UCAUCCAUAUGCAAGUGUUC
..........................(((((((.....)))))))..................(((.(((((.(....).))))).)))............................... (-14.74 = -14.93 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:53 2006