Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,488,294 – 16,488,406 |
Length | 112 |
Max. P | 0.987362 |
Location | 16,488,294 – 16,488,406 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.42 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -15.04 |
Energy contribution | -15.10 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -2.73 |
Structure conservation index | 0.55 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16488294 112 + 22407834 CAAUAAGAACGGCUAGUUGAAAACAUAUAAACUGCAGUCAAUGCCAAACUGUGCGAUAACAGUUAUGUACAUACAUACAUAGGUGUUAAAGUUUUUGUUUGCAUUUCGGUUU ......((((((((((((...........))))..))))(((((.((((...((..(((((.(((((((......))))))).)))))..))....)))))))))...)))) ( -25.00) >DroSec_CAF1 398 108 + 1 CAAUAAGAACGGCUAGUUGCAAACAUAUAAACUGCAGUCAAUGCCAAACUGUGUGAUAACAGCUAUGUACAU----ACAUAGGUGUUAAAGUUUUUGUUUGCAUUUCGGUUU ......((((.(.....((((((((...((((((((((.........)))))....(((((.((((((....----)))))).))))).))))).))))))))...).)))) ( -30.20) >DroSim_CAF1 418 108 + 1 CAAUAAGAACGGCUAGUUGCAAACAUAUAAACUGCAGUCAAUGCCAAACUGUGCGAUAACAGCUAUGUACAU----ACAUAGGUGUUAAAGUUUUUGUUUGCAUUUUGGUUU ..........((((((.((((((((...((((((((((.........)))))....(((((.((((((....----)))))).))))).))))).))))))))..)))))). ( -31.80) >DroYak_CAF1 634 87 + 1 --------------------AUUAAAACAACUGCAAAUCAAUGUCAAACUGUGCGAUAACAGCUACUUACAU----AUGUAGGUG-UUAAGAGUUUGUUUGCAUUGCUGUUU --------------------............(((...(((((.(((((...((..(((((.((((......----..)))).))-)))...))..)))))))))).))).. ( -21.40) >consensus CAAUAAGAACGGCUAGUUGCAAACAUAUAAACUGCAGUCAAUGCCAAACUGUGCGAUAACAGCUAUGUACAU____ACAUAGGUGUUAAAGUUUUUGUUUGCAUUUCGGUUU ............................((((((.....((((.(((((...((..(((((.((((((........)))))).)))))..))....))))))))).)))))) (-15.04 = -15.10 + 0.06)
Location | 16,488,294 – 16,488,406 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.42 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -12.34 |
Energy contribution | -12.96 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.05 |
Mean z-score | -2.09 |
Structure conservation index | 0.55 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16488294 112 - 22407834 AAACCGAAAUGCAAACAAAAACUUUAACACCUAUGUAUGUAUGUACAUAACUGUUAUCGCACAGUUUGGCAUUGACUGCAGUUUAUAUGUUUUCAACUAGCCGUUCUUAUUG .......((((..(((..(((((.(((((..(((((((....)))))))..)))))......)))))(((.((((..(((.......)))..))))...))))))..)))). ( -20.50) >DroSec_CAF1 398 108 - 1 AAACCGAAAUGCAAACAAAAACUUUAACACCUAUGU----AUGUACAUAGCUGUUAUCACACAGUUUGGCAUUGACUGCAGUUUAUAUGUUUGCAACUAGCCGUUCUUAUUG .........((((((((.(((((.(((((.((((((----....)))))).))))).....(((((.......))))).)))))...))))))))................. ( -24.50) >DroSim_CAF1 418 108 - 1 AAACCAAAAUGCAAACAAAAACUUUAACACCUAUGU----AUGUACAUAGCUGUUAUCGCACAGUUUGGCAUUGACUGCAGUUUAUAUGUUUGCAACUAGCCGUUCUUAUUG .........((((((((.(((((.(((((.((((((----....)))))).))))).....(((((.......))))).)))))...))))))))................. ( -24.50) >DroYak_CAF1 634 87 - 1 AAACAGCAAUGCAAACAAACUCUUAA-CACCUACAU----AUGUAAGUAGCUGUUAUCGCACAGUUUGACAUUGAUUUGCAGUUGUUUUAAU-------------------- (((((((..((((((((((((..(((-((.((((..----......)))).)))))......)))))).......)))))))))))))....-------------------- ( -19.91) >consensus AAACCGAAAUGCAAACAAAAACUUUAACACCUAUGU____AUGUACAUAGCUGUUAUCGCACAGUUUGGCAUUGACUGCAGUUUAUAUGUUUGCAACUAGCCGUUCUUAUUG .......(((((((((........(((((.((((((........)))))).))))).......))))).))))....................................... (-12.34 = -12.96 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:48 2006