Locus 5816

Sequence ID 2L_DroMel_CAF1
Location 16,484,293 – 16,484,413
Length 120
Max. P 0.568957
window9232

overview

Window 2

Location 16,484,293 – 16,484,413
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -31.90
Consensus MFE -28.86
Energy contribution -28.43
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -1.36
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.568957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16484293 120 + 22407834
UUCUUCGACAUUAUACAAAUGCUGGAUCACCAGGUUAACCAGAACUUGGUGAAACUAAUGGACGAGCUGGAAAUGAGUUCUCAAUUGCCGGACUUUAAUGUAUCUAGUGUAGAUGGCAAG
.((.((.((((((((((...(((((.((((((((((......))))))))))...((((.((.(((((.......))))))).)))))))).).....))))..)))))).)).)).... ( -29.90)
>DroSec_CAF1 109280 120 + 1
UUUUUCGACAUUAUACAAAUGCUGGAUCACCAGGUUAACCAGAAUUUGGUGAAACUAAUGGACGAGCUGGAACUGAGUUCUCAAUCGCCGGACUUUAAUGUAUCUAGUGUAGAUGGCAAG
........((((.(((....((((((((((((((((......))))))))))......(((.(((...(((((...)))))...))))))............)))))))))))))..... ( -29.00)
>DroSim_CAF1 106556 120 + 1
UUUUUCGACAUUAUACAGAUGCUGGAUCACCAGGUUAACCAGAACUUGGUGAAAGUAAUGGACGAUCUGGAACUGAGUUCUCAAUCGCCGGACUUUAAUGUAUCUAGUGUAGAUGGCAAG
........((((((((((((((....((((((((((......))))))))))((((..(((.((((..(((((...)))))..))))))).))))....)))))).)))).))))..... ( -37.80)
>DroYak_CAF1 111338 120 + 1
UUCUUCGACAUUAUACAAAUGCUGGAUCACCAGGUUAACCAGAACUUGGUAAAACUAAUGGACGAACUAGAGCGAAGUUCUCAAUCGCCGCUCUUUACGGCAUCCAGUGUAGAUGGCAAG
........((((.(((....(((((((.((((((((......))))))))..........((.(((((.......)))))))....((((.......))))))))))))))))))..... ( -30.90)
>consensus
UUCUUCGACAUUAUACAAAUGCUGGAUCACCAGGUUAACCAGAACUUGGUGAAACUAAUGGACGAGCUGGAACUGAGUUCUCAAUCGCCGGACUUUAAUGUAUCUAGUGUAGAUGGCAAG
........((((.(((....((((((((((((((((......))))))))))......(((.(((...(((((...)))))...))))))............)))))))))))))..... (-28.86 = -28.43 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:43 2006