| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,483,461 – 16,483,553 |
| Length | 92 |
| Max. P | 0.592314 |
| Location | 16,483,461 – 16,483,553 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 88.17 |
| Mean single sequence MFE | -14.25 |
| Consensus MFE | -11.02 |
| Energy contribution | -10.03 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16483461 92 + 22407834 AUUUUAGGCUAUUU-UUUCUUUUACCAUUUCCUUAUGUCAUAUGAAUUUCAUUUAAUUAUGACAUAUACAUGAAUCGCUGGCUUUAAAUUCGA ((((.((((((...-.(((..............(((((((((..((......))...))))))))).....)))....)))))).)))).... ( -13.01) >DroSec_CAF1 108431 93 + 1 UUUUUAGGCUAUUUUUUUCUUUUACCAUUUCCUCAUGUCAUGUGAAUUUAAUUUCUUUAUGACAUGUACUUCAAUCUCUAGCUUUAAAUUCGA .(((.((((((.....(......).........(((((((((.(((......)))..)))))))))............)))))).)))..... ( -12.80) >DroSim_CAF1 105737 93 + 1 AUUUUGGGCUAUUUUUUUCUUUUGCCAUUUCCUUAUGUCAUGUGAAUUUAAUUUCUUUAUGACAUAUACUUAAAUCGGUGGCUUUAAAUCCGA ......(((..............))).......(((((((((.(((......)))..)))))))))........((((...........)))) ( -16.94) >consensus AUUUUAGGCUAUUUUUUUCUUUUACCAUUUCCUUAUGUCAUGUGAAUUUAAUUUCUUUAUGACAUAUACUUAAAUCGCUGGCUUUAAAUUCGA .(((.((((((.....(......).........(((((((((.(((......)))..)))))))))............)))))).)))..... (-11.02 = -10.03 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:42 2006