Locus 5814

Sequence ID 2L_DroMel_CAF1
Location 16,483,047 – 16,483,140
Length 93
Max. P 0.792481
window9229 window9230

overview

Window 9

Location 16,483,047 – 16,483,140
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 97.31
Mean single sequence MFE -20.00
Consensus MFE -18.74
Energy contribution -18.80
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.94
SVM decision value 0.55
SVM RNA-class probability 0.778548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16483047 93 + 22407834
UCCAUAACGAUUGCCAUUCCGUCGCCGAACCAAUCGCAUUCCGUUCUCUCCAUUUGAGAGUUCCAUGUACAUAUUUCUUUCUAUAUGGGAAUG
.......((((((...(((.......))).))))))(((((((..(((((.....)))))..)......(((((........))))))))))) ( -20.20)
>DroSec_CAF1 108011 93 + 1
UCCAUAACGAUUGCCAUUCCGUCGCCGAACCAAUCGCAUUCCGUUCUCUCCAUUUGAGAGUUCCAUGUACAUAUUUCUUUCUAUAUGGGAAUG
.......((((((...(((.......))).))))))(((((((..(((((.....)))))..)......(((((........))))))))))) ( -20.20)
>DroSim_CAF1 105317 93 + 1
UCCAUAACGAUUGCCAUUCCGUCGCCGAACCAAUCGCAUUCCGUUCUCUCCAUUUGAGAGUUCCAUGUACAUAUUUCUUUCUAUAUGGGAAUG
.......((((((...(((.......))).))))))(((((((..(((((.....)))))..)......(((((........))))))))))) ( -20.20)
>DroYak_CAF1 109998 93 + 1
UUUAUAACGAUUGCCAUUCCGUCGCCGAGCCAAUCGCAUUACGUUCUCUCCAUUUGAGAGUUCUAUGUACAUAUUUCUUUCUAUAUGGGAAUG
..............((((((...((.((.....))))..(((((.(((((.....)))))....)))))(((((........))))))))))) ( -19.40)
>consensus
UCCAUAACGAUUGCCAUUCCGUCGCCGAACCAAUCGCAUUCCGUUCUCUCCAUUUGAGAGUUCCAUGUACAUAUUUCUUUCUAUAUGGGAAUG
.......((((((...(((.......))).))))))(((((((..(((((.....)))))..)......(((((........))))))))))) (-18.74 = -18.80 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 16,483,047 – 16,483,140
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 97.31
Mean single sequence MFE -23.60
Consensus MFE -22.23
Energy contribution -22.73
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.94
SVM decision value 0.59
SVM RNA-class probability 0.792481
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16483047 93 - 22407834
CAUUCCCAUAUAGAAAGAAAUAUGUACAUGGAACUCUCAAAUGGAGAGAACGGAAUGCGAUUGGUUCGGCGACGGAAUGGCAAUCGUUAUGGA
(((((((((((........))))).........(((((.....)))))...))))))((((((.((((....))))....))))))....... ( -24.80)
>DroSec_CAF1 108011 93 - 1
CAUUCCCAUAUAGAAAGAAAUAUGUACAUGGAACUCUCAAAUGGAGAGAACGGAAUGCGAUUGGUUCGGCGACGGAAUGGCAAUCGUUAUGGA
(((((((((((........))))).........(((((.....)))))...))))))((((((.((((....))))....))))))....... ( -24.80)
>DroSim_CAF1 105317 93 - 1
CAUUCCCAUAUAGAAAGAAAUAUGUACAUGGAACUCUCAAAUGGAGAGAACGGAAUGCGAUUGGUUCGGCGACGGAAUGGCAAUCGUUAUGGA
(((((((((((........))))).........(((((.....)))))...))))))((((((.((((....))))....))))))....... ( -24.80)
>DroYak_CAF1 109998 93 - 1
CAUUCCCAUAUAGAAAGAAAUAUGUACAUAGAACUCUCAAAUGGAGAGAACGUAAUGCGAUUGGCUCGGCGACGGAAUGGCAAUCGUUAUAAA
(((((((((((........))))).........(((((.....)))))..(((...((.....))...)))..)))))).............. ( -20.00)
>consensus
CAUUCCCAUAUAGAAAGAAAUAUGUACAUGGAACUCUCAAAUGGAGAGAACGGAAUGCGAUUGGUUCGGCGACGGAAUGGCAAUCGUUAUGGA
(((((((((((........))))).........(((((.....)))))...))))))((((((.((((....))))....))))))....... (-22.23 = -22.73 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:41 2006