Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,482,436 – 16,482,526 |
Length | 90 |
Max. P | 0.983736 |
Location | 16,482,436 – 16,482,526 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -28.94 |
Energy contribution | -28.75 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -3.10 |
Structure conservation index | 0.88 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16482436 90 + 22407834 CGAGCGAGCGAGAAAGCAGCAUAUUUGCAUAGCCAGUCGUACAUGUUUGCGCUCUCGCUCGCCCCCAUGGGCGACGCCUUAUAUAAACAA ...((((((((((..((((.((((.(((..........))).))))))))..))))))))((((....))))...))............. ( -31.20) >DroSec_CAF1 107401 90 + 1 CGAGCGAGCGAGAAAGCAGCAUAUUUGCAUAGCCAGUCGUACAUGUUUGCGCUCUCGCUCGCCCCCAUGGGCGACGCCUUAUAUAAACAA ...((((((((((..((((.((((.(((..........))).))))))))..))))))))((((....))))...))............. ( -31.20) >DroSim_CAF1 104708 90 + 1 CGAGCGAGCGAGAAAGCAGCAUAUUUGCAUAGCCAGUCGUACAUGUUUGCGCUCUCGCUCGCCCCCAUGGGCGACGCCUUAUAUAAACAA ...((((((((((..((((.((((.(((..........))).))))))))..))))))))((((....))))...))............. ( -31.20) >DroYak_CAF1 109389 86 + 1 UGAGCGAGCGAGAGAGCAGCAUAUUUGCAUAGCCAGUA----UUGUUUGCGCUCUCGCUCGCUCCCAUGGGCAACGCCUUAUAUAAACAA .(((((((((((((.((((((((((.((...)).))))----.)).)))).)))))))))))))....((((...))))........... ( -37.50) >consensus CGAGCGAGCGAGAAAGCAGCAUAUUUGCAUAGCCAGUCGUACAUGUUUGCGCUCUCGCUCGCCCCCAUGGGCGACGCCUUAUAUAAACAA ...((((((((((..((((((....))).....((........))..)))..))))))))((((....))))...))............. (-28.94 = -28.75 + -0.19)
Location | 16,482,436 – 16,482,526 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -32.40 |
Energy contribution | -32.02 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.08 |
Mean z-score | -2.14 |
Structure conservation index | 1.01 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16482436 90 - 22407834 UUGUUUAUAUAAGGCGUCGCCCAUGGGGGCGAGCGAGAGCGCAAACAUGUACGACUGGCUAUGCAAAUAUGCUGCUUUCUCGCUCGCUCG ............(((...))).....(((((((((((((.(((..(((((................))))).))).))))))))))))). ( -31.29) >DroSec_CAF1 107401 90 - 1 UUGUUUAUAUAAGGCGUCGCCCAUGGGGGCGAGCGAGAGCGCAAACAUGUACGACUGGCUAUGCAAAUAUGCUGCUUUCUCGCUCGCUCG ............(((...))).....(((((((((((((.(((..(((((................))))).))).))))))))))))). ( -31.29) >DroSim_CAF1 104708 90 - 1 UUGUUUAUAUAAGGCGUCGCCCAUGGGGGCGAGCGAGAGCGCAAACAUGUACGACUGGCUAUGCAAAUAUGCUGCUUUCUCGCUCGCUCG ............(((...))).....(((((((((((((.(((..(((((................))))).))).))))))))))))). ( -31.29) >DroYak_CAF1 109389 86 - 1 UUGUUUAUAUAAGGCGUUGCCCAUGGGAGCGAGCGAGAGCGCAAACAA----UACUGGCUAUGCAAAUAUGCUGCUCUCUCGCUCGCUCA ............(((...))).....(((((((((((((.(((..((.----...)).....(((....)))))).))))))))))))). ( -34.80) >consensus UUGUUUAUAUAAGGCGUCGCCCAUGGGGGCGAGCGAGAGCGCAAACAUGUACGACUGGCUAUGCAAAUAUGCUGCUUUCUCGCUCGCUCG ............(((...))).....(((((((((((((.(((..((........)).....(((....)))))).))))))))))))). (-32.40 = -32.02 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:40 2006