Locus 5812

Sequence ID 2L_DroMel_CAF1
Location 16,481,446 – 16,481,551
Length 105
Max. P 0.500000
window9226

overview

Window 6

Location 16,481,446 – 16,481,551
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -21.03
Consensus MFE -16.75
Energy contribution -18.00
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16481446 105 - 22407834
CUCCGGUUUCCAAAAUUCCAGUACGAAAACGGUUAUUCGAACUCGAUUAACACAAGCGGGCAAUCGGAAUAAAUAACUUGAAAUAUUCAGAGUAUAUAUUUCACA
.((((((((((............((....))((((.(((....))).))))......))).)))))))..........((((((((.........)))))))).. ( -22.30)
>DroSec_CAF1 106399 105 - 1
CUCCGGUUUCCAAAAUUCCAGUACGAAAACGGUUAUUCGAACUCGAUUACCACACGCGGGCAAUCGGAAUAAAUAACUUGAAAUAUUCAGAGUAUAUAUUUCAAA
.((((((((((....(((......)))...(((...(((....)))..)))......))).))))))).........(((((((((.........))))))))). ( -23.40)
>DroSim_CAF1 103706 105 - 1
CUCCGGUUUCCAAAAUUCCAGUACGAAAACGGUUAUUCGAACUCGAUUAACACACGCGGGCAAUCGAAAUAAAUAACUUGAAAUAUUCAGAGUAUAUAUUUCACA
....(((((((............((....))((((.(((....))).))))......))).))))((((((.(((..((((.....))))..))).))))))... ( -19.10)
>DroYak_CAF1 108382 103 - 1
CUCCGGUUUCCAAAAUUCCAGUACGAAAACGGCUAUUCGAACUCGAUUAACACACGCGGGCAAUCGGAAUAAAUAACUCGAAAUAUUGAAAGUAU--AUUUCAUC
.(((((((.((.....((.(((.((((........)))).))).))....(......))).)))))))...........(((((((.......))--)))))... ( -19.30)
>consensus
CUCCGGUUUCCAAAAUUCCAGUACGAAAACGGUUAUUCGAACUCGAUUAACACACGCGGGCAAUCGGAAUAAAUAACUUGAAAUAUUCAGAGUAUAUAUUUCACA
.((((((((((............((....))((((.(((....))).))))......))).)))))))...........(((((((.........)))))))... (-16.75 = -18.00 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:38 2006