| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,477,152 – 16,477,251 |
| Length | 99 |
| Max. P | 0.951885 |
| Location | 16,477,152 – 16,477,251 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.16 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.951885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16477152 99 - 22407834 UGGCGGAAGUCGAAAGGAUAUG-CCAGCUAAAAAGUGCAAAAAAAAAGAAAGAAUGUGAAUGCUAUAAAUAGAGCGUGAAAAAGGGCUAUAUUUUCGAUA .(((....)))(((((.(((.(-((.((........)).....................(((((........))))).......)))))).))))).... ( -20.40) >DroSec_CAF1 102118 96 - 1 UGGCGGAAGUCGAAAGGAUAUGGCCAGCUAAAAAGUGCAAAAAAA---AAAGAAUGUGAAUGCUAUAAAUAGAGCGUGAAAAAGGGUUUUAU-UUCGAUA .(((....)))....(((((..(((.((........)).......---...........(((((........))))).......)))..)))-))..... ( -17.10) >DroSim_CAF1 99450 94 - 1 UGGCGGAAGUCGAAAGGAUAUGGCCAGCUAAAAAGUGCAAGA--A---AAAGAAUGUGAAUGCUAUAAAUAGAGCGUGAAAAAGGGUUUUAU-UUCGAUA ((((.(...((....))...).))))((........))..((--(---(.(((((.(..(((((........)))))......).))))).)-))).... ( -19.40) >DroEre_CAF1 99159 92 - 1 UGGCGGAAGUCGAAAGGAUAUG-CCAGCUAAAAAGUGCAAAAAA------AAAAUAUGAAUGCUAUAAAUAGAGCGUGAAAAAGGGUUUUAU-UUCGAUA (((((....((....))...))-)))((........))......------................(((((((((.(......).)))))))-))..... ( -16.80) >consensus UGGCGGAAGUCGAAAGGAUAUG_CCAGCUAAAAAGUGCAAAAAAA___AAAGAAUGUGAAUGCUAUAAAUAGAGCGUGAAAAAGGGUUUUAU_UUCGAUA .(((....)))(((...(((.((((.((........)).....................(((((........))))).......)))).))).))).... (-15.15 = -15.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:37 2006