| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,474,027 – 16,474,137 |
| Length | 110 |
| Max. P | 0.529081 |
| Location | 16,474,027 – 16,474,137 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 86.42 |
| Mean single sequence MFE | -36.67 |
| Consensus MFE | -31.12 |
| Energy contribution | -32.71 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16474027 110 - 22407834 -CGGUCGCAAGGUGGCAACUUGGCCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGCCAGAUCGCCAAAACGCCGGGGGCAGUGGGUUAAGC -.....(((((.((((((.(..(..((....))..)..).)))))).))))).((((((((((.((..((((.((..............))))))..)).).))))))))) ( -38.84) >DroSec_CAF1 98829 110 - 1 -CGGUCGCAAGGUGGCAACUUGGCCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGCCAGAUCGCCGAAUCGCCGGGGGCAGUGGGUUAAGC -.....(((((.((((((.(..(..((....))..)..).)))))).))))).((((((((((.((..((((.((...(.....)....))))))..)).).))))))))) ( -38.90) >DroSim_CAF1 96291 110 - 1 -CGGUCGCAAGGUGGCAACUUGGCCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGCCAGAUCGCCGAAUCGCCGGGGGCAGUGGGUUAAGC -.....(((((.((((((.(..(..((....))..)..).)))))).))))).((((((((((.((..((((.((...(.....)....))))))..)).).))))))))) ( -38.90) >DroEre_CAF1 96100 108 - 1 GCGGUCGCAAGGUGGCAACUUGGCCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGUCAGA---CCGAAUCGCCGGUGGCAGUGGGUUAAGC ......(((((.((((((.(..(..((....))..)..).)))))).))))).((((((((((.((..((((...((...---..))....))))..)).).))))))))) ( -36.10) >DroWil_CAF1 135568 88 - 1 ----CAGCAAGGUGGCAAUGGGGCCAUAAAUUUAAUUGAUUUGCCAAUUUGCAG----GCCCCAACCA-UGG----CAG----------GCCCUGGGGCAGUGGGUUAAGC ----..((....((((..(((((((..(((((.....)))))((......)).)----)))))).(((-(..----...----------(((....))).)))))))).)) ( -28.80) >DroYak_CAF1 100836 108 - 1 GCGGUCGCAAGGUGGCAACUUGACCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGCCACA---CCAAAUCGCCGGGGGCAGUGGGUUAAGC ......(((((.((((((.(..(..((....))..)..).)))))).))))).((((((((((.((..((((.((.....---......))))))..)).).))))))))) ( -38.50) >consensus _CGGUCGCAAGGUGGCAACUUGGCCAUAAAUAUAAUUGAUUUGCCAAUUUGCAGCUUAGCCCCAGUUUCUGGACGCCAGA___CCGAAUCGCCGGGGGCAGUGGGUUAAGC ......(((((.((((((.(..(............)..).)))))).))))).((((((((((.((((((((.((..............)))))))))).).))))))))) (-31.12 = -32.71 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:36 2006