| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,465,093 – 16,465,202 |
| Length | 109 |
| Max. P | 0.607976 |
| Location | 16,465,093 – 16,465,202 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.84 |
| Mean single sequence MFE | -41.08 |
| Consensus MFE | -25.21 |
| Energy contribution | -26.35 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16465093 109 - 22407834 UUUUUCUCUCA--AUUUUAGUGCUUUACCAGAAGCGCUUCCGACGCGAGCGAAAGAUCCGCAUCCGCUAUCAGCAGCAGCUUGGUGGCGGCAGCGGUGCGGUGAAGGGCAG ...........--......((.(((((((.....(((((.......)))))...(..((((..(((((((((((....)).)))))))))..))))..)))))))).)).. ( -41.40) >DroPse_CAF1 64588 102 - 1 GUUUUCUUU-U--CUUGCAGUGCUGUACCAAAAGCGCUUCCGACGAGAGCGCAAGAUCCGCAUUCGCUACCAGCAGCAGCUCGGUGGCGGCC------CCAAGAUUAGCAG (((.((((.-(--(((((((((((........))))))...(.(....)))))))).......(((((((((((....))).))))))))..------..))))..))).. ( -34.60) >DroGri_CAF1 67885 108 - 1 UAUUUUUCCCGACUUUGCAGUGCUCUAUCAGAAACGCUUCAGACGCGAGCGGAAGAUUCGCAUCCGCUAUCAGCAGCAGCUGGGCGAAGGGGGCAGCAAAG---GGGGCAA .......(((..((((((.((..((.....)).))(((((...(((.((((((.(.....).)))))).(((((....))))))))...))))).))))))---.)))... ( -39.40) >DroSec_CAF1 89899 107 - 1 UUUU--UUUCA--AUUUUAGUGCUCUACCAGAAGCGCUUCCGACGCGAGCGGAAGAUCCGCAUCCGCUAUCAGCAGCAGCUUGGUGGCGGCAGCGGUGCGGUGAAGGGCAG ....--.....--.......(((((((((.......((((((.(....)))))))..((((..(((((((((((....)).)))))))))..))))...)))..)))))). ( -44.70) >DroEre_CAF1 87158 109 - 1 GUUUUCUGCCC--AUUUCAGUGCUCUACCAGAAGCGCUUCCGACGCGAGCGGAAGAUCCGCAUCCGCUAUCAGCAGCAACUUGGCGGUGGCAGCGGCGCUGUGAAGGGCAG .....((((((--.((.(((((((((.(((...(((((((((.(....)))))))...)))..((((((............))))))))).)).))))))).)).)))))) ( -48.60) >DroYak_CAF1 92027 108 - 1 -UUUCCUGCCC--AUUCUAGUGCUCUACCAGAAGCGCUUCCGUCGCGAGCGGAAGAUCCGCAUCCGCUAUCAGCAGCAACUCGGCGGUGGCAGCGGUGCCGUGAAGGUCAG -....(((.((--.....(((((((.....).))))))....(((((.((((.....))))..(((((..((.(.((......))).))..)))))...))))).)).))) ( -37.80) >consensus UUUUUCUCCCA__AUUUCAGUGCUCUACCAGAAGCGCUUCCGACGCGAGCGGAAGAUCCGCAUCCGCUAUCAGCAGCAGCUUGGCGGCGGCAGCGGUGCCGUGAAGGGCAG ....................((((((..........((((((.(....)))))))..((((..(((((.(((((....))).)).)))))..))))........)))))). (-25.21 = -26.35 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:27 2006