| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,461,627 – 16,461,720 |
| Length | 93 |
| Max. P | 0.873653 |
| Location | 16,461,627 – 16,461,720 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.48 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.65 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16461627 93 - 22407834 --CGCGGAAUCG-GAUUCAGAUACAGAAACU-------------GCAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUAC --.((((..((.-............))..))-------------))((((((((((..(....((((.(((((((....)))))))))))...)..)))))).)))).. ( -17.72) >DroVir_CAF1 67372 92 - 1 AAAG--GAACAC-AACAAAAAAAC-AAAACU-------------ACGUAUUGUAAUUAUACUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGCGC ....--......-...........-.....(-------------(((((((((.......(.....)((((((((....))))))))......))))).)))))..... ( -11.70) >DroWil_CAF1 117604 102 - 1 --AACAAAAG-----AACAGAGACAGAAACUAUAUGCAUAUACGAUAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUGC --........-----....................((((((((((....))(((((..(....((((.(((((((....)))))))))))...)..))))))))))))) ( -18.30) >DroYak_CAF1 88438 79 - 1 -----------------CAGAAACAGAAACU-------------GCAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUAC -----------------.............(-------------((((((.(((((..(....((((.(((((((....)))))))))))...)..)))))))))))). ( -17.30) >DroAna_CAF1 79854 92 - 1 --AGCAAAAGCG--AAACAGAUACAGAAACU-------------GCAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUGC --.((....)).--.................-------------((((((((((((..(....((((.(((((((....)))))))))))...)..)))))).)))))) ( -19.30) >DroPer_CAF1 59614 94 - 1 --GGCAGAGGCAGCACACAGAAACAGAAACU-------------GCAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUAC --.((....))...................(-------------((((((.(((((..(....((((.(((((((....)))))))))))...)..)))))))))))). ( -18.20) >consensus __AGCAGAAGC___AAACAGAAACAGAAACU_____________GCAUAUUGUGAUUAUGAUUAUUGGUAAAUUAUAUUUAAUUUACAGUUAAACGAUCACGUAUGUAC ............................................((((((.((((((....(((...((((((((....))))))))...)))..)))))))))))).. (-14.70 = -14.65 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:25 2006