Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,441,943 – 16,442,033 |
Length | 90 |
Max. P | 0.543760 |
Location | 16,441,943 – 16,442,033 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 71.11 |
Mean single sequence MFE | -15.92 |
Consensus MFE | -9.56 |
Energy contribution | -9.20 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -1.20 |
Structure conservation index | 0.60 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16441943 90 + 22407834 AUAGUAGG-------AACUAUUUUAUUAACCAC---CUAAUCAAUCAUUUCG-UUAGGGUACUUCGAUGUCCCCAAACUGCAUCCCCAGUUCGACUAUAUA (((((..(-------((((.............(---(((((.((....)).)-))))).......(((((.........)))))...))))).)))))... ( -17.10) >DroSec_CAF1 66429 93 + 1 AUAGUAGG-------AACUAUUUUAUUAACCACUUCCUUAUCAUUCUUUUCG-UUAGGGUACUUUGAUGUCCCCAAACUGCAUCCCCAGUUCGACUAUAUA (((((..(-------((((.......(((........)))...........(-((.(((.((......)).))).))).........))))).)))))... ( -13.70) >DroSim_CAF1 66754 93 + 1 AUAGUAGG-------AACUAUUUUAUUAACCACUUCCUUAUCAUUCUUUUCG-UUAGGGUACUUUGAUGUCCCCAAACUGCACCCCCAGUUCGACUAUAUA (((((..(-------((((.......(((........)))...........(-((.(((.((......)).))).))).........))))).)))))... ( -13.70) >DroEre_CAF1 63928 74 + 1 ------CU-------ACCACUUUU-------------CAAUCAAACUCUUCG-CCAGGGUACUUUGAUGUGCCCAAGCUGCAUCCCCAGUUCGACUACAUC ------..-------.........-------------............(((-...((((((......)))))).(((((......))))))))....... ( -14.20) >DroYak_CAF1 67641 77 + 1 GUAGUAGA-------AACAAUUUU---------------AUCAACCUUUUUG--CAGGGUACUUUGAUGUCCCCAAACUGCAUCCCCAGUUCGAAUAUAUC ...(((((-------((.......---------------.......))))))--).(((.((......)).))).(((((......))))).......... ( -11.14) >DroPer_CAF1 41154 90 + 1 -GAGCAGGCCAUGGAAAUGGGCGU----AGCAC-----UGA-AAUCCUUUCGUUUAGGGUACUUCGAUGUCCCCAAGCUGCAUCCCCAGCUGGACUACAUC -..((.(.((((....)))).)..----.))..-----.((-((((((.......)))))..)))(((((..(((.((((......)))))))...))))) ( -25.70) >consensus AUAGUAGG_______AACUAUUUU____ACCAC____UUAUCAAUCUUUUCG_UUAGGGUACUUUGAUGUCCCCAAACUGCAUCCCCAGUUCGACUAUAUA ........................................................(((.((......)).))).(((((......))))).......... ( -9.56 = -9.20 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:14 2006