| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,439,976 – 16,440,086 |
| Length | 110 |
| Max. P | 0.539077 |
| Location | 16,439,976 – 16,440,086 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.61 |
| Mean single sequence MFE | -31.06 |
| Consensus MFE | -19.70 |
| Energy contribution | -20.32 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16439976 110 + 22407834 UGUGGCUAAUAGACUGUGGACAUGGGCUAAGGUUAGAAAUGCUUUGGCUUGUUAUAUCUGGGCCACAAUGAUAUG----GGAUAGAUAUGUGUACCAUACA---UAUAUGUACAUAU (((((((..((((.((((...(..(((((((((.......)))))))))..))))))))))))))))...(((((----..(((.((((((((...)))))---))).))).))))) ( -34.80) >DroSec_CAF1 64419 109 + 1 UGUGGCUAAUAGACAGUGGACAUGGGCUAAGGUCAGAAAUGCUUGGGCUUGUUAUAUCUGGGCCACAAUGAUAUG----GGAUAGAUAUGUGUAC-AUACA---UAUAUGUGCGGAU (((((((..((((.(...((((..((((.(((.((....))))).)))))))).).)))))))))))........----........((.(((((-(((..---..)))))))).)) ( -30.50) >DroSim_CAF1 64745 109 + 1 UGUGGCUAAUAGACAGUGGACAUGGGCUAAGGUCAGAAAUGCUUGGGCUUGUUAUAUCUGGGCCACAGUGAUAUG----GGAUAGAUAUGUGUAC-AUACA---UAUAUGUGCGGAU (((((((..((((.(...((((..((((.(((.((....))))).)))))))).).)))))))))))........----........((.(((((-(((..---..)))))))).)) ( -30.50) >DroYak_CAF1 65608 113 + 1 UGUGGCUAAUAGACAGUGGACAUGGGCUAAGGUCAGAGUUGGUUGGGCU---UAUAUCUGGGCCACCAUCAUAUACAUAGGACAGAUAUAUGUAC-AUACACAUUGUAUGUGCGGAG ...(((((((.(((..(((.......)))..)))...))))))).....---((((((((..((...............)).))))))))(((((-((((.....)))))))))... ( -28.46) >consensus UGUGGCUAAUAGACAGUGGACAUGGGCUAAGGUCAGAAAUGCUUGGGCUUGUUAUAUCUGGGCCACAAUGAUAUG____GGAUAGAUAUGUGUAC_AUACA___UAUAUGUGCGGAU .((((((..((((.....((((..((((.((((.......)))).))))))))...))))))))))........................(((((.(((.......))))))))... (-19.70 = -20.32 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:13 2006