| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,437,173 – 16,437,270 |
| Length | 97 |
| Max. P | 0.505814 |
| Location | 16,437,173 – 16,437,270 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.64 |
| Mean single sequence MFE | -16.85 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16437173 97 + 22407834 UAUUAUUUAUGACAUUGUUUUUGUCAUUUGAUUUUGAUGAUAUUUUUCAAUGAAUUAUUGCCGCGACGACUUUCUUUUGUUCGGUUCCGUAUGAAAU .....((((((.(((((....(((((((.......))))))).....))))).......((((.(((((.......)))))))))....)))))).. ( -17.80) >DroSec_CAF1 61586 92 + 1 UAUUAUUUAUGACAUUGUUUUUGUCAUUUGAUUUUGAUGAUAUUUUUCAAUGAAUUAUUGCCGCGGCGACUUUCUUUUGUUCCGUUCCGUAU----- .......((((.(((((....(((((((.......))))))).....)))))..........((((.(((........)))))))..)))).----- ( -16.70) >DroEre_CAF1 59265 97 + 1 UAUUAUUUAUGACAUUGUUUUUGUCAUUUGAUUUUGAUGAUAUUUUUCAAUGAAUUAUUGCCGCAGCGACUUUCUUUUGUUCCGCUCCGCAUAAAAU .....((((((.(((((....(((((((.......))))))).....))))).........((.((((((........))..)))).)))))))).. ( -18.60) >DroYak_CAF1 62798 97 + 1 UAUUAUUUAUGACAUUGUUUUUGUCAUUUGAUUUUGAUGAUAUUUUUCAAUGAAUUAUUGCCGCCGCGACUUUCUUUUGUUCCGUUUCGUAUAAAAU .......((((((((((....(((((((.......))))))).....)))))............((.(((........))).))..)))))...... ( -14.30) >consensus UAUUAUUUAUGACAUUGUUUUUGUCAUUUGAUUUUGAUGAUAUUUUUCAAUGAAUUAUUGCCGCGGCGACUUUCUUUUGUUCCGUUCCGUAUAAAAU .....((((((.(((((....(((((((.......))))))).....))))).........((.((((((........))..)))).)))))))).. (-13.26 = -13.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:10 2006