Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,431,954 – 16,432,061 |
Length | 107 |
Max. P | 0.968422 |
Location | 16,431,954 – 16,432,061 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -25.68 |
Energy contribution | -26.48 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16431954 107 + 22407834 AUAUUUGCCUUUUUGCACAUGGUUGACAUUUUCCCCAACGCCAUUUUGGCCAUGUUGGCACAGCGCUGGCAAUGUUUUAUGGCCGAGAAAAAGGGAAAAUUUUUGGG ...(((.(((((((....(((((((..........))..)))))((((((((((..((((..((....))..)))).))))))))))))))))).)))......... ( -28.60) >DroSec_CAF1 56312 107 + 1 AUGUUUGCCUUUUUGCACAUGGUUGACAUUUUCCCCAACGCCAUUUUGGCCAUGUUGCCACAGCGCUGGCGAUGUUUUAUGGCCGAGAAAAAGGGAAAAUUUUUGGA .((((.(((...........))).))))(((((((........(((((((((((((((((......))))))).....))))))))))....)))))))........ ( -32.70) >DroSim_CAF1 56632 107 + 1 AUGUUUGCCUUUUUGCACAUGGUUGACAUUUUCCCCAACGCCAUUUUGGCCAUGUUGCCACAGCGCUGGCGAUGUUUUAUGGCCGAGAAAAAGGGAAAAUUUUUGGA .((((.(((...........))).))))(((((((........(((((((((((((((((......))))))).....))))))))))....)))))))........ ( -32.70) >DroEre_CAF1 51242 107 + 1 AUGUUUGCCUUUUUGCACAUGGUUGACAUUUUCACCAACGCCAUUUUGGCCAUGUUGGCAGAGGGGUGGCGAUGUUUUAUGGCCGAGAAAAAGGGAAAAUUUUCGGG .((.(..((((((((((((((((((..........))))(((.....))))))))..)))))))))..)))...........(((((((..........))))))). ( -31.80) >DroYak_CAF1 57595 107 + 1 AUGUUUGCCUUUUUGCACAUGGUUGACAUUUUCAGCAACGCCAUUUUGGCCAUGUUGGCAGAGGGCUGGCGAUGUUUUAUGGCCGAGAAAAAGGGAAAAUAUUCGGU ((((((.(((((((((.....(((((.....)))))...))..((((((((((((((.(((....))).)))).....))))))))))))))))).))))))..... ( -32.10) >consensus AUGUUUGCCUUUUUGCACAUGGUUGACAUUUUCCCCAACGCCAUUUUGGCCAUGUUGGCACAGCGCUGGCGAUGUUUUAUGGCCGAGAAAAAGGGAAAAUUUUUGGA ...(((.(((((((....(((((((..........))..)))))((((((((((..((((..((....))..)))).))))))))))))))))).)))......... (-25.68 = -26.48 + 0.80)
Location | 16,431,954 – 16,432,061 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -22.38 |
Energy contribution | -23.18 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.86 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16431954 107 - 22407834 CCCAAAAAUUUUCCCUUUUUCUCGGCCAUAAAACAUUGCCAGCGCUGUGCCAACAUGGCCAAAAUGGCGUUGGGGAAAAUGUCAACCAUGUGCAAAAAGGCAAAUAU .......(((((((((.......(((.((.....)).)))(((((((((((.....)))....)))))))))))))))))..........(((......)))..... ( -27.40) >DroSec_CAF1 56312 107 - 1 UCCAAAAAUUUUCCCUUUUUCUCGGCCAUAAAACAUCGCCAGCGCUGUGGCAACAUGGCCAAAAUGGCGUUGGGGAAAAUGUCAACCAUGUGCAAAAAGGCAAACAU .........(((.(((((((....(((((...(((((.((((((((.((((......))))....)))))))).))...))).....))).))))))))).)))... ( -29.00) >DroSim_CAF1 56632 107 - 1 UCCAAAAAUUUUCCCUUUUUCUCGGCCAUAAAACAUCGCCAGCGCUGUGGCAACAUGGCCAAAAUGGCGUUGGGGAAAAUGUCAACCAUGUGCAAAAAGGCAAACAU .........(((.(((((((....(((((...(((((.((((((((.((((......))))....)))))))).))...))).....))).))))))))).)))... ( -29.00) >DroEre_CAF1 51242 107 - 1 CCCGAAAAUUUUCCCUUUUUCUCGGCCAUAAAACAUCGCCACCCCUCUGCCAACAUGGCCAAAAUGGCGUUGGUGAAAAUGUCAACCAUGUGCAAAAAGGCAAACAU .........(((.(((((((...(((.((.....)).)))........((..((((((((.....)))((((..(....)..)))))))))))))))))).)))... ( -22.20) >DroYak_CAF1 57595 107 - 1 ACCGAAUAUUUUCCCUUUUUCUCGGCCAUAAAACAUCGCCAGCCCUCUGCCAACAUGGCCAAAAUGGCGUUGCUGAAAAUGUCAACCAUGUGCAAAAAGGCAAACAU .......................(((.((.....)).))).(((...(((..((((((......(((((((......))))))).)))))))))....)))...... ( -22.00) >consensus CCCAAAAAUUUUCCCUUUUUCUCGGCCAUAAAACAUCGCCAGCGCUGUGCCAACAUGGCCAAAAUGGCGUUGGGGAAAAUGUCAACCAUGUGCAAAAAGGCAAACAU .........(((.((((((((.(((((((....(((.((....)).))).....))))))....(((((((......))))))).....).).))))))).)))... (-22.38 = -23.18 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:09 2006