Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,403,720 – 16,403,810 |
Length | 90 |
Max. P | 0.500000 |
Location | 16,403,720 – 16,403,810 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.01 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -21.11 |
Energy contribution | -22.07 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.80 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16403720 90 - 22407834 AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGA-GCUAA-AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA (((....(((.....))).((((((.....))))))-)))..-..(((((.....)))))(((((((((.....))).))))))........ ( -28.80) >DroSec_CAF1 28121 91 - 1 AGCAAAACGCAAACUGCGAUCAAGAAGUGGUCUUGA-GCUAAAAGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA (((....(((.....))).((((((.....))))))-))).....(((((.....)))))(((((((((.....))).))))))........ ( -29.20) >DroSim_CAF1 27129 91 - 1 AGCAAAACGCAAACUGCGAUCAAGAAGUGGUCUUGA-GCUAAAAGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA (((....(((.....))).((((((.....))))))-))).....(((((.....)))))(((((((((.....))).))))))........ ( -29.20) >DroEre_CAF1 23960 73 - 1 AGCAAAACGCAAACGGCGAUCGAGAAGUGCUCUUGA-GCCAA-A-----------------AGCAUCAGGUUCUCUGCAUGCCUGUCACGUA ......(((...(((((..((((((.....))))))-)))..-.-----------------.(((((((.....))).))))..))..))). ( -17.30) >DroYak_CAF1 28923 91 - 1 AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGAAGCCAA-AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA .((.....))....(((..((((((.....)))))).)))..-..(((((.....)))))(((((((((.....))).))))))........ ( -30.10) >DroAna_CAF1 23577 91 - 1 AGCAAAACGCAAACGGCGAUCAAGAAGUGGACUCGGAGCUAA-AGCCACAGCCAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA .((....(((.....)))........((((.((.........-)))))).))...((.(.(((((((((.....))).)))))).).))... ( -23.10) >consensus AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGA_GCUAA_AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA .((....(((.....))).((((((.....)))))).))......(((((.....)))))(((((((((.....))).))))))........ (-21.11 = -22.07 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:58 2006