Locus 579

Sequence ID 2L_DroMel_CAF1
Location 1,774,226 – 1,774,322
Length 96
Max. P 0.696546
window955

overview

Window 5

Location 1,774,226 – 1,774,322
Length 96
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -19.25
Consensus MFE -11.06
Energy contribution -11.12
Covariance contribution 0.06
Combinations/Pair 1.32
Mean z-score -2.10
Structure conservation index 0.57
SVM decision value 0.34
SVM RNA-class probability 0.696546
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1774226 96 - 22407834
UCAUUCGGGUUUAUCUUUUAGAUAAAUCUCUGGAGCAGCUUUCGCUCUCUUCUGCCAUUCUAUGCUCUCUGCUGCCAUAAUUUCGAG-ACCAACAUC
...((((((((((((.....))))))))..((((((((.....((..................))...))))).)))......))))-......... ( -18.47)
>DroSec_CAF1 31236 96 - 1
UCAGUCGGGUUUAUCUUUCAGAUAAAUCUCUGGAGCAGCUUUCGCUCUCUUCUCCCAUUCUAUCCUCUCUGCUGCCAUAAUUUCGAG-ACCAACAUC
...((((((((((((.....))))))))).((((((((..............................))))).))).........)-))....... ( -17.21)
>DroYak_CAF1 40411 95 - 1
UCGCUCGUGU-UAUCUCACAGAUAAAUCUCUAGAGAAGCUUUCGCUCUCUUCUGCGAUUCCAUCCUCUCUGCUGCCAUAAUUUCGAG-ACCAACCUC
...((((.((-(((..((((((..((((.(.(((((.((....)))))))...).))))........)))).))..)))))..))))-......... ( -18.10)
>DroAna_CAF1 31487 90 - 1
U--UUCAGGAUUGUCUCUCAGAUAAUUCU---GAAAAGCUUUCGCUCUUCUUUGGCAUUUCCCGCACUCCGCUGCCAUAAUUUCGAGGACCAACA--
(--((((((((((((.....)))))))))---)))).......(.(((((..(((((......((.....))))))).......))))).)....-- ( -23.20)
>consensus
UCAUUCGGGUUUAUCUCUCAGAUAAAUCUCUGGAGAAGCUUUCGCUCUCUUCUGCCAUUCCAUCCUCUCUGCUGCCAUAAUUUCGAG_ACCAACAUC
...((((((((((((.....)))))))))..((((.(((....)))))))..................................))).......... (-11.06 = -11.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:10 2006