Locus 5788

Sequence ID 2L_DroMel_CAF1
Location 16,400,650 – 16,400,770
Length 120
Max. P 0.780555
window9177

overview

Window 7

Location 16,400,650 – 16,400,770
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.89
Mean single sequence MFE -29.02
Consensus MFE -25.45
Energy contribution -25.23
Covariance contribution -0.22
Combinations/Pair 1.21
Mean z-score -1.61
Structure conservation index 0.88
SVM decision value 0.56
SVM RNA-class probability 0.780555
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16400650 120 - 22407834
CGGCCUUUUUGACAAGUUAAAGAACCUACAGGUGCUGAACUUGGAGCACAAUCCGAUAACCACCAUUGCCCUGAAUGCCUUUACUCCCAUCCCAACUGCCCAUAUCUACGUGGGCAAACU
.(((.(((((((....))))))).....((((.((((...(((((......)))))....)).....))))))...))).................(((((((......))))))).... ( -27.90)
>DroSec_CAF1 25102 120 - 1
CGGCCUUUUUGACAAGUUAAAGAACCUACAGGUGCUGAACCUGGAGCACAAUCCGAUAACCACCAUUGCCCUGAAUGCCUUUACUCCCAUACCAACUGCCCAUAUCUACGUGGGCAAACU
.(((.(((((((....))))))).....((((.((.......(((......)))(.....)......))))))...))).................(((((((......))))))).... ( -27.20)
>DroSim_CAF1 23845 120 - 1
CGGCCUUUUUGACAAGUUAAAGAACCUACAGGUGCUGAACCUGGAGCACAAUCCAAUAACCACCAUUGCCCUGAAUGCCUUUACUCCCAUACCAACUGCCCAUAUAUACGUGGGCAAACU
.(((.(((((((....))))))).....((((.((((....((((......)))).....)).....))))))...))).................(((((((......))))))).... ( -27.10)
>DroEre_CAF1 21146 120 - 1
CGGCCUCUUUGACAAGCUGAAGAACCUGCAGGUGCUGAACCUGGAGCACAAUCCCAUAACCACCAUUGCCCUGAACGCCUUCACGCCCAUACCAACUGCCCAUAUCUACGUGGGCAAACU
.(((.(((((........)))))..((.(((((.....))))).))..............................))).................(((((((......))))))).... ( -27.10)
>DroYak_CAF1 25863 120 - 1
CGGCCUCUUUGACAAGUUAAAGAACCUGCAGGUGCUUAACUUGGAGCACAACCCGAUAACCACCAUUGCCCUGAAUGCCUUCACCCCCAUACCAACUGCCCACAUCUACGUGGGCAAGCU
.(((.(((((((....)))))))....(((((((.(((..((((........))))))).))))..))).......))).................(((((((......))))))).... ( -32.00)
>DroAna_CAF1 20037 120 - 1
CGGUCUCUUUGACAAGUUAAAGAACCUUCAGGUGCUGAAUUUGGAGCACAAUCCGAUAACCACAAUCGCUCCGAAUGCCUUCGUUCCGAUACCCACGGCCCAUAUCUAUGUGGGCAAGCU
.(((.(((((((....))))))))))....((.((.(.(((((((((....................)))))))))..)...)).))..........(((((((....)))))))..... ( -32.85)
>consensus
CGGCCUCUUUGACAAGUUAAAGAACCUACAGGUGCUGAACCUGGAGCACAAUCCGAUAACCACCAUUGCCCUGAAUGCCUUCACUCCCAUACCAACUGCCCAUAUCUACGUGGGCAAACU
.(((.(((((((....))))))).....((((((((........)))))....((((.......))))..)))...))).................(((((((......))))))).... (-25.45 = -25.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:53 2006