Locus 5787

Sequence ID 2L_DroMel_CAF1
Location 16,400,228 – 16,400,333
Length 105
Max. P 0.739035
window9176

overview

Window 6

Location 16,400,228 – 16,400,333
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -26.77
Consensus MFE -16.95
Energy contribution -17.45
Covariance contribution 0.50
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.63
SVM decision value 0.44
SVM RNA-class probability 0.739035
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16400228 105 + 22407834
-----GGCGGCGUUGAAAGCGGACAACAAAUAUUAAUAUUGUUUGUAUUUCAUGCGCUAUCUGCUUUUUAUUUCGUUUUCAAUUUGGCCAUG------UCU----GACUCGGAAGAAGGG
-----(((.(.((((((((((((..(((((((.......))))))).........((.....)).......)))))))))))).).)))...------.((----...((....)).)). ( -28.20)
>DroSec_CAF1 24680 102 + 1
-----GGCGGCGUUGAAAGCGGGCUACAAAUAUUAAUAUUGUUUGUAUUUCAUGCGCUAUCUGCUUUUUAUUUCGUUUUCAAUUUGGCCAUG------UCU----GACUCGGA---AGGG
-----(((.(.((((((((((((.((((((((.......))))))))........((.....)).......)))))))))))).).)))...------...----..(((...---.))) ( -29.60)
>DroSim_CAF1 23423 102 + 1
-----GGCGGCGUUGAAAGCGGGCUACAAAUAUUAAUAUUGUUUGUAUUUCAUGCGCUAUCUGCUUUUUAUUUUGUUUUCAAUUUGGCAAUG------UCU----GACUCGGA---AGGG
-----.((.(.((((((((((((.((((((((.......)))))))).)))....((.....))..........))))))))).).))....------...----..(((...---.))) ( -25.50)
>DroEre_CAF1 20751 88 + 1
-----------AUUGAAAGCGAGCUACAAAUAUUAAUAUUGUUUGUA------------UCUGCUUUUUAUUUCGUUUUCAAUUUGGCCAUG------UCUGUCCGACUUGGA---AGUU
-----------(((((((((((((((((((((.......))))))))------------...))........)))))))))))....(((.(------((.....))).))).---.... ( -21.30)
>DroYak_CAF1 25437 107 + 1
GAGUCGGCGGCGUUGAAAGCGAGCUACAAAUAUUAAUAUUGUUUGUAUUUCAUGCGCUAUCUGCUUUUUAUUUCGUUUUCAAUUUGGCCAUG------UCU----GACUUGGA---AGGG
(((((((((((((((((((((((.((((((((.......))))))))........((.....)).......))))))))))))...)))..)------.))----)))))...---.... ( -30.70)
>DroAna_CAF1 19634 106 + 1
-------CGCCGUUGAAAGCGAGCAACAAAUAUUAAUAUUGUUUGUAUUUCAUACGCUUUCUGCUUUUUAUUUCGUUUUCAAUUUAGUCAGGAAACCGUCC----GGAUCUGG---GUCC
-------.(((((((((((((((..(((((((.......))))))).........((.....)).......)))))))))))).(((((.(((.....)))----.)).))))---)).. ( -25.30)
>consensus
_____GGCGGCGUUGAAAGCGAGCUACAAAUAUUAAUAUUGUUUGUAUUUCAUGCGCUAUCUGCUUUUUAUUUCGUUUUCAAUUUGGCCAUG______UCU____GACUCGGA___AGGG
........(((((((((((((((..(((((((.......))))))).........((.....)).......))))))))))))...)))............................... (-16.95 = -17.45 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:52 2006