Locus 5785

Sequence ID 2L_DroMel_CAF1
Location 16,398,539 – 16,398,659
Length 120
Max. P 0.623481
window9172

overview

Window 2

Location 16,398,539 – 16,398,659
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -25.57
Consensus MFE -20.57
Energy contribution -20.53
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value 0.18
SVM RNA-class probability 0.623481
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16398539 120 - 22407834
GAUCCCUAACCCCUAGAAUUAACCAAAAGCUCCACCUCUGCCCACAACUGACCAGCGACAACAACUGGCCAUCCACUUGGGCCCAGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
.......................((((((((.((.....(((((....((.((((.........)))).))......)))))((((.......))))...........)).)))))))). ( -25.30)
>DroSec_CAF1 23001 120 - 1
UAUUCCAAACCCCUAGACUUAACCAAAACCCACACCUCUGUCCACAACUGACCAGCGACAACAACUGGCCAUCCACUUGGCCCCAGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
...............................(((...((((........((((((((.(((.....(((((......))))).....))))).)))).)).........))))....))) ( -21.33)
>DroSim_CAF1 21754 120 - 1
GAUACCAAACCCCUAGAAUUAACCAAAAGCUCCACCUCUGCCCACAACUGACCAGCGACAACAACUGGCCAUCCACUUGGCCCCAGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
.......................((((((((.((....((....))...((((((((.(((.....(((((......))))).....))))).)))).))........)).)))))))). ( -26.70)
>DroEre_CAF1 19291 103 - 1
GUUGGCAACCCCCUA-----------------CGCCCCUGUCCCCAACUGACCAGCGACAACAACUGGCCAGCCACUUGGCCCCGGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
(((((..((......-----------------.......))..))))).((((((((.((((....((((((....))))))...).))))).)))).))...(((((.......))))) ( -23.82)
>DroYak_CAF1 23684 120 - 1
GAUUCCAACCCCCUAGAAGUAUCCAAGGGCUCCACCUCUGCCCACUACUGACCAGCGACAACAACUGGCCAUCCACUUGGCCCCAGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
.............(((((((......((((.........))))......((((((((.(((.....(((((......))))).....))))).)))).))............))))))). ( -30.70)
>consensus
GAUUCCAAACCCCUAGAAUUAACCAAAAGCUCCACCUCUGCCCACAACUGACCAGCGACAACAACUGGCCAUCCACUUGGCCCCAGAUUGCGACUGGCUCUCCACAAAUGCAGCUUUUGU
.....................................((((........((((((((.(((.....(((((......))))).....))))).)))).)).........))))....... (-20.57 = -20.53 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:48 2006