Locus 5784

Sequence ID 2L_DroMel_CAF1
Location 16,398,208 – 16,398,325
Length 117
Max. P 0.930364
window9171

overview

Window 1

Location 16,398,208 – 16,398,325
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.09
Mean single sequence MFE -24.21
Consensus MFE -21.23
Energy contribution -21.26
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 1.20
SVM RNA-class probability 0.930364
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16398208 117 + 22407834
---CUUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAAGCCAGCCACUGGAGCUAGUCGGC
---....((((((...((((.(((..............))).....(....)...............)))).........(((((.....)))))))))))(((((((....)))).))) ( -26.34)
>DroSec_CAF1 22656 117 + 1
---CUUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAACCCAGCCACUGGAGCUAGUCGCC
---...(((((((...((((.(((..............)))..........................((....)).....(((((.....)))))......))))...)))))))..... ( -22.24)
>DroSim_CAF1 21409 117 + 1
---CUUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAACCCAGCCACUGGAGCUAGUCGCC
---...(((((((...((((.(((..............)))..........................((....)).....(((((.....)))))......))))...)))))))..... ( -22.24)
>DroEre_CAF1 18954 120 + 1
GCUCCUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAACCCAGCCACUGAAGCUAGUCGCC
(((.(..(((((....((((((((..............)))..........................(((..........)))........)))))....)))))..).)))........ ( -23.24)
>DroYak_CAF1 23336 120 + 1
CCUCCUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAACCCAGCCACUGGAGCUAGUCGAC
.((((..(((((....((((((((..............)))..........................(((..........)))........)))))....)))))..))))......... ( -26.14)
>DroAna_CAF1 17884 119 + 1
-CUCCUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAAGCCAGCCACUGGACCUAGUCCAC
-.....(((((((...((((.(((..............))).....(....)...............)))).........(((((.....))))))))))))....(((((...))))). ( -25.04)
>consensus
___CCUUUGGCUUAUCUGGCAGCACAAUCCAUUAAAAUUGCACAUCGUUUACACCAAAAAUCAAUUCGCCAAAGCAUUUAGGCAUUACAAAUGCCAACCCAGCCACUGGAGCUAGUCGCC
......(((((((...((((.(((..............)))..........................((....)).....(((((.....)))))......))))...)))))))..... (-21.23 = -21.26 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:47 2006