Locus 5776

Sequence ID 2L_DroMel_CAF1
Location 16,393,115 – 16,393,235
Length 120
Max. P 0.523807
window9146

overview

Window 6

Location 16,393,115 – 16,393,235
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -34.66
Consensus MFE -18.66
Energy contribution -22.10
Covariance contribution 3.44
Combinations/Pair 1.15
Mean z-score -2.14
Structure conservation index 0.54
SVM decision value -0.02
SVM RNA-class probability 0.523807
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16393115 120 - 22407834
AUAUGUUAAUUGCAGCAGCGCCAAACAGAAGCCCCAAACGGUUGGGGCGGUUGGGGGGCUUUCUUAGUUUCUGGGAGGUGUAUCUGAUUGUCAGAGUUCAAAUAGCAAUUGAAAUAAACG
.(((.((((((((....(((((...(((..(((((((....)))))))..)))((..(((.....)))..))....))))).((((.....)))).........)))))))).))).... ( -42.20)
>DroSec_CAF1 17687 101 - 1
AUAUGUUAAUUGCAGCAGCGCCAAACAGAAGCCCCAAACGGUUGGGGCGGUUGGG-GGCUUUCUUAGU------------------AGUUUCAGAGUUCAAAUAGCAAUUGAAAUAAACG
.(((.((((((((...(((.((.(((....(((((((....))))))).))).))-.)))((((.((.------------------...)).))))........)))))))).))).... ( -31.40)
>DroEre_CAF1 14328 108 - 1
AUAUGUUAAUUGCAGCAGCGCCAAACGGAAGCCCAAAAUG----------UUUGG-GGCUUUCCUAGUUUCUGGGCGGUGUGUCUGAUUGUCAGGGUUCAAAUGGCAAUUGAAAUAAAC-
.(((.((((((((.(((.((((((((((((((((......----------....)-)))))))...))))...)))).))).((((.....)))).........)))))))).)))...- ( -34.80)
>DroYak_CAF1 18139 119 - 1
AUAUGUUAAUUGCAGCAGCGCCAAACAGAAGCCCCAAAUGGUCGGAGUGGUUGGG-GUCUUUCUUAGUUUCAGGGAGGUGUAUCUGAUUGUCAGAGUUCAAAUAGCAAUUGAAAUAAGCG
.(((.((((((((....(((((........(((((((.............)))))-))..(((((......)))))))))).((((.....)))).........)))))))).))).... ( -30.22)
>consensus
AUAUGUUAAUUGCAGCAGCGCCAAACAGAAGCCCCAAACGGUUGGGGCGGUUGGG_GGCUUUCUUAGUUUCUGGGAGGUGUAUCUGAUUGUCAGAGUUCAAAUAGCAAUUGAAAUAAACG
.(((.((((((((....(((((...((((((((((((.((.......)).)))))...........)))))))...))))).((((.....)))).........)))))))).))).... (-18.66 = -22.10 +   3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:24 2006