| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,392,167 – 16,392,270 |
| Length | 103 |
| Max. P | 0.500000 |
| Location | 16,392,167 – 16,392,270 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 96.10 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -15.45 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16392167 103 + 22407834 UAUUCUCCGUUGGGAACCUUUUUUCCCUUAUAAUUUAUUAUGCUUACUUUUUGUCCUCGCCCAUAACUCGACUUAAAUGUGGCAUAAAAUGACAGCAUAAAUA ...........(((((......)))))..........(((((((....((((((....((((((............))).)))))))))....)))))))... ( -18.60) >DroSec_CAF1 16751 102 + 1 UAUUC-CCGUUGGGAACCUUUUUCCCUUUAAAAUUUAUUAUGCUUACUUUUUGUCCUUGCCCAUAACUCGACUUAAAUGUGGCAUAAAAUGACAGCAUAAAUA .....-.....(((((.....)))))...........(((((((....(((((....(((((((............))).)))))))))....)))))))... ( -18.60) >DroSim_CAF1 13767 102 + 1 UAUUC-CCGUUGGGAACCUUUUUUCCCUUAUAAUUUAUAAUGCUUACUUUUUGUCCUUGCCCAUAACUCGACUUAAAUGUGGCAUAAAAUGACAGCAUAAAUA .....-.....(((((......)))))............(((((....(((((....(((((((............))).)))))))))....)))))..... ( -16.50) >consensus UAUUC_CCGUUGGGAACCUUUUUUCCCUUAUAAUUUAUUAUGCUUACUUUUUGUCCUUGCCCAUAACUCGACUUAAAUGUGGCAUAAAAUGACAGCAUAAAUA ...........(((((......)))))..........(((((((....((((((....((((((............))).)))))))))....)))))))... (-15.45 = -15.90 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:21 2006