Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,391,121 – 16,391,241 |
Length | 120 |
Max. P | 0.701022 |
Location | 16,391,121 – 16,391,241 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -26.52 |
Energy contribution | -27.04 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.81 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16391121 120 + 22407834 GGCGUCGGCGGAAUUUUCUGUCGACUUUGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGCGUU .(((((((((((....)))))))))((((((...((..(((((...(((....)))...(((.......)))...)))))..))...))))))((((((.....)))))).....))... ( -34.20) >DroSec_CAF1 15701 119 + 1 GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGAGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU (((((((((((...-..)))))))).((((((.((....))...)))))).........)))...(((((.((((...(((((((((......))))))).))...))).).)))))... ( -32.40) >DroSim_CAF1 12715 119 + 1 GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU (((((((((((...-..)))))))).((((((.((....))...)))))).........)))...(((((.((((...(((((((((......))))))).))...))).).)))))... ( -32.40) >DroEre_CAF1 12453 114 + 1 GGCGUCGGCGGAAU-UUCUGUCGCCUGGGAUUUUCAGCAGACGUAAUCCUUGGGGAAAUGCC-AGAUUUG----UUGUCUGAUGUGUGUUUAAAUGCAUUAAGUGUGUGUAGUAGGUGUU .((((((((((...-..)))))((.(((.....))))).)))))..(((....)))((((((-((((...----..))))(((((((......)))))))..............)))))) ( -28.60) >DroYak_CAF1 16095 119 + 1 GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUACCUAAAUUUGGUUAUUGUCUGAUGUGUGUUGAAAUACAUUAAGUGAAUGUAGUAGGUGUU ...((((((((...-..)))))))).((((((.((....))...))))))......((((((((.......(((((...((((((((......)))))))))))))......)))))))) ( -35.32) >consensus GGCGUCGGCGGAAU_UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU ((((((((((((....))))))))).((((((.((....))...)))))).........))).................((((((((......))))))))................... (-26.52 = -27.04 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:20 2006