Locus 5772

Sequence ID 2L_DroMel_CAF1
Location 16,390,539 – 16,390,659
Length 120
Max. P 0.500000
window9141

overview

Window 1

Location 16,390,539 – 16,390,659
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -28.80
Consensus MFE -26.54
Energy contribution -26.10
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.07
Structure conservation index 0.92
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16390539 120 + 22407834
AAAAUAAAAAGCCCAGAAUACUCUGCUGCCGGCGAUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCCGAAGCUGGCGCAGUCUGGUGUUCCUCCUCG
...............(((((((..(((((((((((((.((.....((((((((((........))))).)))))......)).))))))))..(....))))))..)))))))....... ( -29.30)
>DroSec_CAF1 15125 120 + 1
AAAAUAAAAAGCCCAGAAUACUCUGCUGCCGGCGAUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCCGAAGCUGGCGCAGUCUGGUGUUCCUCCUCG
...............(((((((..(((((((((((((.((.....((((((((((........))))).)))))......)).))))))))..(....))))))..)))))))....... ( -29.30)
>DroSim_CAF1 12135 120 + 1
AAAAUAAAAAGCCCAGAAUACUCUGCUGCCGGCGAUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCCGAAGCUGGCGCAGUCUGGUGUUCCUCCUCG
...............(((((((..(((((((((((((.((.....((((((((((........))))).)))))......)).))))))))..(....))))))..)))))))....... ( -29.30)
>DroEre_CAF1 11907 119 + 1
AAAAUAAAAUGCCCCGAAUACUCUGCUGUCGGCGAUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCCGAGGCUGGCGCAGUCUGGUGUUGUU-CGCC
.........(((.((((....)).(((.(((((((((.((.....((((((((((........))))).)))))......)).)))))))))))).)).)))....((((.....-)))) ( -27.60)
>DroYak_CAF1 15528 118 + 1
AAAAUAAAAUGCCCAGAAUACUCUGCUGCCGGCGGUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCUGAAGCUGG--CAGUCUGGUGCUCCUCCUCC
..........(((((((.....(((((((((((((((.((.....((((((((((........))))).)))))......)).))))))))..)).))--)))))))).))......... ( -28.50)
>consensus
AAAAUAAAAAGCCCAGAAUACUCUGCUGCCGGCGAUGCUGGAAAAUUUCAUUAGACUAUAAUUUUUAAUUGAAAACUGUAUAUCAUUGCCGAAGCUGGCGCAGUCUGGUGUUCCUCCUCG
..........(((((((....((.(((..((((((((.((.....((((((((((........))))).)))))......)).)))))))).))).)).....))))).))......... (-26.54 = -26.10 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:19 2006