Locus 5770

Sequence ID 2L_DroMel_CAF1
Location 16,389,555 – 16,389,669
Length 114
Max. P 0.658210
window9138

overview

Window 8

Location 16,389,555 – 16,389,669
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.47
Mean single sequence MFE -19.19
Consensus MFE -14.04
Energy contribution -14.28
Covariance contribution 0.24
Combinations/Pair 1.08
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.26
SVM RNA-class probability 0.658210
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16389555 114 - 22407834
AUGGAAAAAUCGUAACAUUUAAAAGCUGUUCUCAUAAACAUAAUGGGAUCAGAGGGAAAAACCUUAAGCCCCUGGAAACAAAA------AAAAGAAAGUGAAGAAGUCAUCAAAAUGUAA
..............((((((....(((.(..((((.........(((....((((......))))...))).((....))...------........))))..)))).....)))))).. ( -18.20)
>DroSec_CAF1 14142 119 - 1
AUGGAGAAAUCGUAACAUUUAAAAGCUGUUCUCAUAAACAUAAUGGGAUCAGAGGGAA-AACCCUAAGCCCCUGGAAACAAAAAAAAAAAAAAGAAAGUGAAGAAGUCAUCAAAAUGUAA
...((....))...((((((....(((.(..((((.........(((.....((((..-..))))...))).((....)).................))))..)))).....)))))).. ( -20.80)
>DroSim_CAF1 11146 118 - 1
AUGGAGAAAUCGUAACAUUUAAAAGCUGUUCUCAUAAACAUAAUGGGAUCAGAGGGAAAAACCUUAAGCCCCUGGAAACAAAAAA--AAAAAAGAAAGUGAAGAAGUCAUCAAAAUGUAA
...((....))...((((((....(((.(..((((.........(((....((((......))))...))).((....)).....--..........))))..)))).....)))))).. ( -19.80)
>DroEre_CAF1 10975 111 - 1
AUGUGGAAGUCGUAACAUUUAAAAGCUGUUCUCAUAAACAUAAUGUGAUCAGUGGGGAAAACCCUAAGCUCCUGAAAACAAA---------AAGAAAGUGAAGAAGUCAUCAAAAUGUAA
..............((((((....(((.(..((((........(((..(((((((((....))))).....))))..)))..---------......))))..)))).....)))))).. ( -16.69)
>DroYak_CAF1 14450 113 - 1
ACGCAGAAAUCGUAACAUUUAAAAGCUGUUCCCAUAAACAUAAUGUGAUCAGGGGGGAAAACCCUAAGCCCCUGAAAACAAA-------AAAAGAAAGUGAAGAAGUCAUCAAAAUGUAA
(((.(....)))).((((((....(((.(((............(((..(((((((((.....))....)))))))..)))..-------..........)))..))).....)))))).. ( -20.45)
>consensus
AUGGAGAAAUCGUAACAUUUAAAAGCUGUUCUCAUAAACAUAAUGGGAUCAGAGGGAAAAACCCUAAGCCCCUGGAAACAAAA______AAAAGAAAGUGAAGAAGUCAUCAAAAUGUAA
..............((((((.....(((.((((((.......)))))).)))((((.....)))).......((....)).................((((.....))))..)))))).. (-14.04 = -14.28 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:16 2006