Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,768,991 – 1,769,087 |
Length | 96 |
Max. P | 0.737479 |
Location | 1,768,991 – 1,769,087 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -15.12 |
Consensus MFE | -9.21 |
Energy contribution | -9.85 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.61 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1768991 96 - 22407834 GAGGAAGGCCUCCUCCUUCAUCUUAACAUUUUCAAAUCUGAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU ((.(((((......))))).)).......................................((((((((..(((....)))...)))))))).... ( -14.90) >DroSec_CAF1 25973 96 - 1 GAGGAAGGCCACCUCCUCCAUCUAACCAUUUUCAAAUCUUAUUUUCCCACAUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU (((((.((...)))))))...........................................((((((((..(((....)))...)))))))).... ( -15.50) >DroSim_CAF1 28302 96 - 1 GAGGAAGGCCACCUCCUCCAUCUUACCAUUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU (((((.((...)))))))...........................................((((((((..(((....)))...)))))))).... ( -15.50) >DroEre_CAF1 25815 95 - 1 GAGGAAAGGCUUCUCCUGCAUUCUCCCGAUUUGAAAUCCUAUUUUGCCACCUGUUUCUAUUUUCCGAUUCC-UGACACCAAUUCAAUCGGAGUUUU .(((...(((..........(((.........)))..........))).))).........(((((((...-(((.......)))))))))).... ( -12.75) >DroYak_CAF1 34963 96 - 1 GAGGAAUCCCUUUUCCUUCAUUCUCCUCAUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACGCAAAUUCAAUCGGAGUUUU ((((((......))))))...........................................(((((((....(((.......)))))))))).... ( -12.00) >DroAna_CAF1 25283 89 - 1 --AACAGGCC-----UUCCAGGUUUCCCAUUCCAAUUUAUAUUUUUCUGGUGGUUUGUGUUUUUCGAUUCCUUGACACCAAUUCAAUCGGAGACCC --.(((((((-----..(((((.......................))))).)))))))..(((((((((..(((....)))...)))))))))... ( -20.10) >consensus GAGGAAGGCCUCCUCCUCCAUCUUACCAAUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU (((((........)))))...........................................((((((((..(((....)))...)))))))).... ( -9.21 = -9.85 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:06 2006