Locus 5769

Sequence ID 2L_DroMel_CAF1
Location 16,389,323 – 16,389,443
Length 120
Max. P 0.999717
window9137

overview

Window 7

Location 16,389,323 – 16,389,443
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.31
Mean single sequence MFE -36.96
Consensus MFE -32.86
Energy contribution -32.58
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -2.83
Structure conservation index 0.89
SVM decision value 3.94
SVM RNA-class probability 0.999717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16389323 120 + 22407834
AAACAAAGCCACCUUUUUGGGCCUACAUUUGCGUACCAUUUCGGUUGCAUUUCCCAAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAAAAACGCCCUAACAGAAGUAA
......(((((..((((((((.....(..((((.(((.....)))))))..))))))))).((........)))))))......(((((((((((........)))))))))))...... ( -36.00)
>DroSec_CAF1 13912 119 + 1
AAACAAAGCCACCUUUUUGGGCCUACAUUUGCGUACCAUUUCGGUUGCAUUGCCCAAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAA-AACCCCCUAACAGAAGCAA
......(((((..(((((((((.......((((.(((.....)))))))..))))))))).((........)))))))......(((((((((.(.....-...))))))))))...... ( -35.60)
>DroSim_CAF1 10916 119 + 1
AAACAAAGCCACCUUUUUGGGCCUACAUUUGCGUACCAUUUCGGUUGCAUUGCCCAAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAA-AACCCCCUAACAGAAGCAA
......(((((..(((((((((.......((((.(((.....)))))))..))))))))).((........)))))))......(((((((((.(.....-...))))))))))...... ( -35.60)
>DroEre_CAF1 10764 119 + 1
AAACAGAGCCACCUUUUUGGGCCUACAUUUGUGUGGCAUUUCGGUUGCAUUUCCCGAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAA-AACGCCCCAGCAGAAGCAA
......(((((((.....))((((((....))).)))((((((((..(.(((....))))..)))).))))..)))))......(((((((((((.....-..)))))))))))...... ( -40.90)
>DroYak_CAF1 14213 119 + 1
AAGCAGAGCCACCUUUUUGGGCCUACAUUUGUGUACCAUUUCGGUUGCAUUUCCCAAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAA-AACGCCCUAACAGAAGCAA
..((..(((((..((((((((.........(((((((.....)).)))))..)))))))).((........)))))))......(((((((((((.....-..)))))))))))..)).. ( -36.70)
>consensus
AAACAAAGCCACCUUUUUGGGCCUACAUUUGCGUACCAUUUCGGUUGCAUUUCCCAAAAGUGACUGUAAAUUCUGGCUAAUGAACUGUUGGGGUGAGAAA_AACGCCCUAACAGAAGCAA
......(((((..((((((((........((((.(((.....)))))))...)))))))).((........)))))))......(((((((((((........)))))))))))...... (-32.86 = -32.58 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006