Locus 5768

Sequence ID 2L_DroMel_CAF1
Location 16,389,064 – 16,389,163
Length 99
Max. P 0.648620
window9136

overview

Window 6

Location 16,389,064 – 16,389,163
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 93.90
Mean single sequence MFE -33.13
Consensus MFE -26.33
Energy contribution -26.00
Covariance contribution -0.33
Combinations/Pair 1.06
Mean z-score -2.49
Structure conservation index 0.79
SVM decision value 0.24
SVM RNA-class probability 0.648620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16389064 99 - 22407834
UGGUUUCUGUUUUUGGGGUUUUGGCCUCACCUUCGGACCAGGUAGUUGAUGGAGGGUUGGCUUCUGUUUAAGUCGGGGGGUUUUUAAAUGGAGAUACCA
.(((((((((((..(((((....)))))((((((.(((((((.(((..((.....))..))))))).....))).))))))....))))))))..))). ( -31.00)
>DroSec_CAF1 13655 97 - 1
UGGUUUCUGUUUUUGGGGUUUAGGCCUCACCUUCG-ACCAGGUAGUUGAAGGAGGGUUGGCUCUUGUUUGAGUCGGG-GGUUUCUAAAUGGAGAUACCC
.(((.(((.(.(((((((.....(((((.((((((-((......)))))))).....((((((......))))))))-)))))))))).).))).))). ( -34.20)
>DroSim_CAF1 10659 97 - 1
UGGUUUCUGUUUUUGGGGUUUUGGCCUCACCUUCG-ACCAGGUAGUUGAAGGAGGGUUGGCUCUUGUUUGAGUCGGG-GGUUUCUAAAUGGAGAUACCC
.(((.(((.(.(((((((.....(((((.((((((-((......)))))))).....((((((......))))))))-)))))))))).).))).))). ( -34.20)
>consensus
UGGUUUCUGUUUUUGGGGUUUUGGCCUCACCUUCG_ACCAGGUAGUUGAAGGAGGGUUGGCUCUUGUUUGAGUCGGG_GGUUUCUAAAUGGAGAUACCC
.(((.(((.(.(((((((....(((((..((((((.((......)))))))).)))))(((((......))))).......))))))).).))).))). (-26.33 = -26.00 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:14 2006