Locus 5766

Sequence ID 2L_DroMel_CAF1
Location 16,388,363 – 16,388,482
Length 119
Max. P 0.809160
window9133

overview

Window 3

Location 16,388,363 – 16,388,482
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.60
Mean single sequence MFE -23.08
Consensus MFE -16.22
Energy contribution -16.14
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -2.07
Structure conservation index 0.70
SVM decision value 0.64
SVM RNA-class probability 0.809160
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16388363 119 - 22407834
UGAACCUAAAGCUGAACUUGAUCCAGAAGCUGAACAGAAAAAAAAGAAUGGA-AAAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGUUCAUGCACUUUUGAGCAACACUUUCAGCG
..........((((((..((.((((....((.............))..))))-...((((((.(.....)...))))))........(((((((........)))))))))..)))))). ( -22.72)
>DroSec_CAF1 12997 107 - 1
UG------------AACUUGAUCCAGAAGCUGAACAACACAAAAAAAAUGGA-AAAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGUUCAUGCACUUUUGAGCAACACUUUCAGCG
..------------..............((((((..............(((.-...((((((.(.....)...))))))...)))..(((((((........)))))))....)))))). ( -19.60)
>DroSim_CAF1 10017 106 - 1
UG------------AACUUGAUCCAGAAGCUGAACAAAA-AAAUAAUGUGGA-AAAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGUUCAUGCACUUUUGAGCAACACUUUCAGCG
..------------..............((((((.....-........(((.-...((((((.(.....)...))))))...)))..(((((((........)))))))....)))))). ( -19.50)
>DroEre_CAF1 9880 116 - 1
UGAGCCAGAAGCUGAACUUGAUCCAGAAAUUGAGCAAAAA--AAGAAAUGGA--AAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGCUCAUGCACUUUUGAGCAACACUUUCGGCG
...(((....(((.((.((........)))).))).....--........((--(((((...(.((((......)))))........(((((((........))))))))))))))))). ( -25.90)
>DroYak_CAF1 13285 116 - 1
UGGAGCUGUAGCUGAACUUGAUCCAG----UGAGUAAAGAAAAAAAAUUGGAAAAAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGUUCAUGCACUUUUGAGCAACACUUUCAGCG
....(((((((((..((((..(((((----(...............))))))..))))...))))).....................(((((((........)))))))......)))). ( -27.66)
>consensus
UG___C___AGCUGAACUUGAUCCAGAAGCUGAACAAAAAAAAAAAAAUGGA_AAAGUGAAAGCUAAAUGAAAUUUUACAAACCAAAUUGUUCAUGCACUUUUGAGCAACACUUUCAGCG
............................((((((..............(((.....((((((.(.....)...))))))...)))..(((((((........)))))))....)))))). (-16.22 = -16.14 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:11 2006