Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,386,743 – 16,386,837 |
Length | 94 |
Max. P | 0.555985 |
Location | 16,386,743 – 16,386,837 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -19.53 |
Energy contribution | -19.12 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.74 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16386743 94 + 22407834 CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--UUCGUUUAAGGGUGUUCCAG----------------------- (((.(((....((((...)))).....(((((((((((.....((.((((((....))))))))...))))-)..--.......))))))))).)))----------------------- ( -23.50) >DroSec_CAF1 10267 94 + 1 CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--CUCCCUUGAGUGUGUUCCAG----------------------- ..((((((...(((..(((.((.....)).)))....)))))))))((((((....))))))........(-(((--(((....)))))))......----------------------- ( -26.40) >DroSim_CAF1 8379 94 + 1 CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--CUCGUUUGAGGGUGUUCCAG----------------------- (((.((((((..((.(((((((.((((((.........))))))))((((((....)))))).........-..)--))))..))..)))))).)))----------------------- ( -26.10) >DroEre_CAF1 8415 91 + 1 CUGCAACAUUUGCAUUGAGUGCUAACGGCCCAUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUCCACA--CUC----GAGGGUGUUCCAG----------------------- (((.((((((....(((((((.(((((((.........))))))).((((((....))))))...........))--)))----)).)))))).)))----------------------- ( -24.40) >DroYak_CAF1 11641 94 + 1 CUGCAGCAUUUGCAUUGAGUGCUAACGGCCUUCUGAUUGUUGUUGCAACUGCUGUUGCAGUUUAUAAAAUC-AUG--CUCGUCUGAGAAUGUUCCAG----------------------- (((.((((((..((.(((((((.((((((.........))))))))((((((....)))))).........-..)--))))..))..)))))).)))----------------------- ( -26.00) >DroAna_CAF1 7635 119 + 1 GUGCAACAUUUGCAUUGAGUGCUAACGGCCUUUUCAUUGUUGUUGCAACUGCUGUUGCACUUCAUAAAAUC-AGAGAUUGCUAGCUGGGUGUUCCGGGUUACAGGACAUUCGGACAUAAA ..((((..((((.(((((((((.((((((..((.((.......)).))..)))))))))))).....))))-)))..))))..(((((((((((.(.....).)))))))))).)..... ( -32.50) >consensus CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC_AUA__CUCGUUUGAGGGUGUUCCAG_______________________ ((((((((...(((.....(((.((((((.........)))))))))..)))))))))))............................................................ (-19.53 = -19.12 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006