Locus 5764

Sequence ID 2L_DroMel_CAF1
Location 16,385,893 – 16,386,004
Length 111
Max. P 0.999019
window9131

overview

Window 1

Location 16,385,893 – 16,386,004
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -25.62
Consensus MFE -23.32
Energy contribution -23.20
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -2.23
Structure conservation index 0.91
SVM decision value 3.33
SVM RNA-class probability 0.999019
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16385893 111 - 22407834
ACAAAACACUUCCGGCUCACUGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGUUGGAUUUCCUUUUAUGCUUGAGCUUUUUUUUUCUGUUCGCACAUGAUUACCUUACA
(((((((..((((((....)))))).)))))))(((...((((.((......)).))))..)))..(((((..(((((...........)))))..))))).......... ( -23.10)
>DroSec_CAF1 9421 110 - 1
ACAAAACACUUCCGGCUCACUGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGUUGGAUUUCCUUUUAUGCUUGAGCUUUU-UUUUCUGUUCGCACAUGAUUACCUUACA
(((((((..((((((....)))))).)))))))(((...((((.((......)).))))..)))..(((((..(((((....-......)))))..))))).......... ( -23.20)
>DroSim_CAF1 7534 109 - 1
ACAAAACACUUCCGGCUCACUGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGCUGGAUUUCCUUUUAUGCUUGAGCUUUU--UUUCUGUUCGCACAUGAUUACCUUACA
(((((((..((((((....)))))).)))))))(((...((((.((......)).))))..)))..(((((..(((((....--.....)))))..))))).......... ( -23.30)
>DroEre_CAF1 7564 107 - 1
ACAAAACACUUCCGGCUCACUGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGUUGGAUUUCCUUUUAUGCUCGAGCUUU----UUCUGUUCGCACAUGAUUACCGAGCA
(((((((..((((((....)))))).)))))))((((........))))(((((..((....))..(((((..(((((...----....)))))..)))))....))))). ( -31.50)
>DroYak_CAF1 10787 109 - 1
ACAAAACACUUCCGGCUCACCGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGUUGGAUUUCCUCUUAGGCUUGAGCUUUU--UUUCUGUUCGCACAUGAUUACCUAACA
(((((((..((((((....)))))).)))))))((((........))))(((((..((....))...)))))..((((....--.....)))).................. ( -27.00)
>consensus
ACAAAACACUUCCGGCUCACUGGGACGUUUUGUGGAUUUUCUAUUAUCCGCUUGUUGGAUUUCCUUUUAUGCUUGAGCUUUU__UUUCUGUUCGCACAUGAUUACCUUACA
(((((((..((((((....)))))).)))))))(((...((((.((......)).))))..)))..(((((..(((((...........)))))..))))).......... (-23.32 = -23.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:09 2006