Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,385,552 – 16,385,712 |
Length | 160 |
Max. P | 0.667891 |
Location | 16,385,552 – 16,385,672 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -22.37 |
Energy contribution | -22.77 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.16 |
Mean z-score | -1.51 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16385552 120 - 22407834 AAGGAGAUAUGGUUCUUCUAUCCAGCAUUUCACUCCUUUUGGCAAUUUUCCCAUUUAUUUCUGCUGCUGGGAAGCAAUUGAAAUGGUAUUUUCAUUUCCGAGUGUGCACUUGUUGCUCGA .((((((......)))))).(((((((............(((........)))...........))))))).(((((..(((((((.....)))))))(((((....))))))))))... ( -29.40) >DroSec_CAF1 9082 120 - 1 AAGGAGAUCUGGUUCUUCUAACCAGCAUUUCACUCCUUUUGGCAAUUUUCCCAUUUAUUUCUGCUGCCGGAGAGCAAUUGAAAUGGUAUUUUCAUUUCCGAGUGUGCACUUGUUGCUCGA ...(((((((((((.....)))))).)))))......(((((((....................)))))))((((((..(((((((.....)))))))(((((....))))))))))).. ( -33.65) >DroSim_CAF1 7196 120 - 1 AAGAAGAACUGGUUCUUCUACCCAGCAUUUCACUCCUUUUGGCAAUUUUCCCAUUUAUUUCUGCUGCCGGAAAGCAAUUGAAAUGGUAUUUUCAUUUCCGAGUGUGCACUUGUUGCUCGA .(((((((....)))))))...(((((...(((((.((((((((....................)))))))).......(((((((.....))))))).)))))......)))))..... ( -29.05) >DroEre_CAF1 7243 120 - 1 CAGCAGAUUUUGCAUUUCCGCCCAGCAUUUCACUCCUUUUGGCAAUUUUCCCAUUUAUGGCCGCUGCCGGGUAGCAAUUGAAAUGGUAUUUUCAGUUCCGAGUGUACACUUGUUGCUCGC ((((.((...(((...........)))..)).........(((................))))))).((((((((((((((((......))))))))..((((....)))))))))))). ( -27.49) >DroYak_CAF1 10429 120 - 1 AAGCAGAUUUGGUUCUUCUACCCAGCAUUUCACUCCUUUUGGCAAUUUUCCCACUUAUUUAUACUGCCGGGGAGCAAUUGAAAUGGUAUUUUCAUUUCCGAGUGUACACUUGUUGCUCGA .((.(((......))).)).(((.(((............(((........)))...........))).)))((((((..(((((((.....)))))))(((((....))))))))))).. ( -27.40) >consensus AAGCAGAUCUGGUUCUUCUACCCAGCAUUUCACUCCUUUUGGCAAUUUUCCCAUUUAUUUCUGCUGCCGGGAAGCAAUUGAAAUGGUAUUUUCAUUUCCGAGUGUGCACUUGUUGCUCGA .((((((......))))))...(((((...(((((.((((((((....................)))))))).......(((((((.....))))))).)))))......)))))..... (-22.37 = -22.77 + 0.40)
Location | 16,385,592 – 16,385,712 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.56 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -18.17 |
Energy contribution | -18.53 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.24 |
Mean z-score | -2.11 |
Structure conservation index | 0.60 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16385592 120 + 22407834 CAAUUGCUUCCCAGCAGCAGAAAUAAAUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGAUAGAAGAACCAUAUCUCCUUGUGGUAGUAAAACAUGUGGAGGGGGUGGGAAAUUGUGCGA (((((.((((((((((.((........(((........))).......))...))))))...))))..((((.(((((.((((.........)))).)))))..))))..)))))..... ( -29.36) >DroSec_CAF1 9122 120 + 1 CAAUUGCUCUCCGGCAGCAGAAAUAAAUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGUUAGAAGAACCAGAUCUCCUUGUGGUAGUAAAACAUGUGGAGGGGGUGGGAAAUUGUGCAA ...(..((((((.(((.((........)).....(((((((.((((((.......((((((.....))))))..)))))).)))))))......))).).)))))..)............ ( -34.90) >DroSim_CAF1 7236 120 + 1 CAAUUGCUUUCCGGCAGCAGAAAUAAAUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGGUAGAAGAACCAGUUCUUCUUGUGGUAGUAAAACAUGUGGAGGGGGUGGGAAAUUGUGCAA ...(((((((((.((..(........(((.....(((((((.((((((......(((((.........))))).)))))).)))))))....)))......)..)).)))))....)))) ( -30.54) >DroEre_CAF1 7283 103 + 1 CAAUUGCUACCCGGCAGCGGCCAUAAAUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGGCGGAAAUGCAAAAUCUGCUGGU---------------GGAGUGGGUGGGAAAAUGU--AG ......(((((((.(((((((((....))).....(((((...((.(......).)).)))))...........)))))).)---------------)).))))............--.. ( -27.40) >DroYak_CAF1 10469 118 + 1 CAAUUGCUCCCCGGCAGUAUAAAUAAGUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGGUAGAAGAACCAAAUCUGCUUGUGGUAGUAGAAAAUGUGGAAGGGGUGGGAAAUUGU--AG ...(..((((((((((.(((.......(((........)))......)))...)))))).........(((..((((((......)))))).....)))..))))..)........--.. ( -28.32) >consensus CAAUUGCUCCCCGGCAGCAGAAAUAAAUGGGAAAAUUGCCAAAAGGAGUGAAAUGCUGGGUAGAAGAACCAAAUCUCCUUGUGGUAGUAAAACAUGUGGAGGGGGUGGGAAAUUGUGCAA (((((.((.(((((((.((........(((........))).......))...))))))).)).....(((..(((((((..................))))))))))..)))))..... (-18.17 = -18.53 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:08 2006