Locus 5761

Sequence ID 2L_DroMel_CAF1
Location 16,385,177 – 16,385,288
Length 111
Max. P 0.828784
window9126

overview

Window 6

Location 16,385,177 – 16,385,288
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 99.28
Mean single sequence MFE -12.44
Consensus MFE -12.00
Energy contribution -12.20
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.96
SVM decision value 0.71
SVM RNA-class probability 0.828784
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16385177 111 + 22407834
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGCUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCGAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.(((.........))))))....... ( -12.90)
>DroSec_CAF1 8710 111 + 1
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGCUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCGAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.(((.........))))))....... ( -12.90)
>DroSim_CAF1 6824 111 + 1
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGCUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCGAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.(((.........))))))....... ( -12.90)
>DroEre_CAF1 6866 111 + 1
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGCUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCGAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.(((.........))))))....... ( -12.90)
>DroYak_CAF1 10052 111 + 1
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGAUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCUAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.((...........)))))....... ( -10.60)
>consensus
GUGACAAAGCCACUUAACACCUACUCAUGUCACCCACACAAUCCGCUUAGUUUAAAUACCCAAAAGGCUAAACAAAAAACCCGGUAGCGAAAACCACACGCACCCACACAA
((((((.....................))))))...........(.(((((((...........))))))).).........(((.(((.........))))))....... (-12.00 = -12.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:04 2006