Locus 5759

Sequence ID 2L_DroMel_CAF1
Location 16,384,157 – 16,384,260
Length 103
Max. P 0.792826
window9123

overview

Window 3

Location 16,384,157 – 16,384,260
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.38
Mean single sequence MFE -24.74
Consensus MFE -13.77
Energy contribution -15.13
Covariance contribution 1.36
Combinations/Pair 1.06
Mean z-score -1.74
Structure conservation index 0.56
SVM decision value 0.59
SVM RNA-class probability 0.792826
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16384157 103 - 22407834
GGCGCUGGAACCCGCUGGGUGUCAC--ACUCGGACACUCGCAUGACACAUGCAAAUUUUCCACUCGCAUCCCCGACCCCAG---------------AACAGCCACAUCCACAUCCGCAUC
(((.((((........(((((((..--.....)))))))(((((...))))).........................))))---------------....)))................. ( -26.30)
>DroSec_CAF1 7733 98 - 1
GGCGCUGGAACCCGCUGGGUGUCAC--ACUCGGACACUCGCAUGACACAUGCAAAUUUUCCACUCGCAUCCC-----CCAG---------------AACAGCCACAUCCACAUCCGCAUC
(((.((((.....((.(((((((..--.....)))))))(((((...))))).............)).....-----))))---------------....)))................. ( -27.30)
>DroSim_CAF1 5828 98 - 1
GGCGCUGGAACCCGCUGGGUGUCAC--ACUCGGACACUCGCAUGACACAUGCAAAUUUUCCACUCGCAUCCC-----CCAG---------------AACAGCCACAUCCACAUCCGCAUC
(((.((((.....((.(((((((..--.....)))))))(((((...))))).............)).....-----))))---------------....)))................. ( -27.30)
>DroEre_CAF1 5950 91 - 1
----------CCCGCUGGGUGUCAC--ACUCG-CCACUCGCAUGACACAUGCAAAUUUUCCAGUCGCAUCCUCC-CCCCAA---------------AGCAGCCACAUCCGGAUCCACAUC
----------....((((((((...--.....-......(((((...)))))..........((.((.......-......---------------.)).)).))))))))......... ( -16.04)
>DroYak_CAF1 9055 112 - 1
GGCGCUGGAGCCCGCUGGGUGUCAC--ACUCGGACACUCGCAUGACACAUGCAAAUUUACCACUCGCAUCCCCU-CCAAAACAGCC-----CCUUCCACAGCCACAUCCACAGCCACAUC
(((..((((....((((((((((..--.....)))))).(((((...)))))......................-...........-----.......))))....))))..)))..... ( -28.90)
>DroAna_CAF1 3803 112 - 1
-----CGGUACCCGCUGGGUGUCGCCCGCCCGGUCACUCGCAUGACACAUGCAAAUUUCCAACUGCCCUCCAUUAC-CAAAU--CCGAAAGCCCCCCACAUUCCCAUGCCCAUGCCCAUA
-----.((((...((((((((.....)))))))).....(((((......(((..........)))..........-.....--.(....).............)))))...)))).... ( -22.60)
>consensus
GGCGCUGGAACCCGCUGGGUGUCAC__ACUCGGACACUCGCAUGACACAUGCAAAUUUUCCACUCGCAUCCCC__C_CCAA_______________AACAGCCACAUCCACAUCCGCAUC
......(((....((((((((((.........)))))).(((((...)))))..............................................))))....)))........... (-13.77 = -15.13 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:01 2006