| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,381,491 – 16,381,592 |
| Length | 101 |
| Max. P | 0.763467 |
| Location | 16,381,491 – 16,381,592 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.17 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -18.75 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16381491 101 - 22407834 AUAUUUUAUGCAUUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGUUUAAUUUUUCGAAAAUUUCCUAUCCACUC-------------------UGUGCUGUG .........((((.....(((((((..((.(((((((........)))))))))..)))))))..(((((.....)))))............-------------------.)))).... ( -20.70) >DroSec_CAF1 5159 99 - 1 AUAUUUUAUGCAUUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGUUUAAUUUUUGGAAAAUUUCCCAUCCCCUC---------------------CGCUGUG ...........((((((((((((((..((.(((((((........)))))))))..))))))).........))))))).............---------------------....... ( -23.30) >DroSim_CAF1 3196 99 - 1 AUAUUUUAUGCAUUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGUUUAAUUUUUGGAAAAUUUCCCAUCCACUA---------------------CGCUGUG ...........((((((((((((((..((.(((((((........)))))))))..))))))).........)))))))........(((..---------------------....))) ( -24.50) >DroEre_CAF1 3314 94 - 1 AUAUUUUAUGCACUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGUUUAAUUUUUGGAAAAUUUCCUAUCCACUC--------------------------UG .............((((((((((((..((.(((((((........)))))))))..))))))).........)))))...............--------------------------.. ( -21.80) >DroYak_CAF1 5533 99 - 1 AUAUUUUAUGCACUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGCUUAAUUUUUUGAAAAUUUUCUAACCACUC---------------------CGCUGUG .........((........((((((..((.(((((((........)))))))))..))))))...........(((....))).........---------------------.)).... ( -19.10) >DroAna_CAF1 1262 119 - 1 AUAUUUUAUGCCUUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCGGGCAUGUUUAAUUUUU-GAAAAUUUCCUAUCCACUAGCUCGACACUUUCCCACUCUCCACUGCA ....................(((((.....(((((((........)))))))...((((.((..((.....(-....).....))..))...)))))))))................... ( -23.40) >consensus AUAUUUUAUGCAUUUUCCACGUGUCAAAUCGCGCGUCAAUCAAUCGAUGCGCAUCAGGCAUGUUUAAUUUUUGGAAAAUUUCCUAUCCACUC_____________________CGCUGUG ..(((((...........(((((((..((.(((((((........)))))))))..)))))))...........)))))......................................... (-18.75 = -18.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:57 2006