Locus 5754

Sequence ID 2L_DroMel_CAF1
Location 16,379,539 – 16,379,659
Length 120
Max. P 0.944676
window9114

overview

Window 4

Location 16,379,539 – 16,379,659
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -28.18
Consensus MFE -26.74
Energy contribution -26.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.95
SVM decision value 1.35
SVM RNA-class probability 0.944676
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16379539 120 - 22407834
UUCCAUCAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUUGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAACGUGAAGGUGGGUUUA
........((((((.(....(((((((.....)))))))(((((((.(((((((.(((..((((........))))....)))..))))))).)).....)))))......).)))))). ( -28.10)
>DroSec_CAF1 3229 120 - 1
UUCCAUCAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUCGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAACGUGAAAGUGGGUUUA
........((((((.(....(((((((.....)))))))(((((...((((.(((((.(((((....)))))...((((......)))).))))))))).)))))......).)))))). ( -29.10)
>DroSim_CAF1 1274 120 - 1
UUCCAUCAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUUGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAACGUGAAGGUGGGUUUA
........((((((.(....(((((((.....)))))))(((((((.(((((((.(((..((((........))))....)))..))))))).)).....)))))......).)))))). ( -28.10)
>DroEre_CAF1 1385 120 - 1
GUCCAACAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUUGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAAAGUGAAGGUGGGUUUA
........((((((.(.((((((((((.....))))))))))(.((.(((((((.(((..((((........))))....)))..))))))).)))...............).)))))). ( -27.50)
>DroYak_CAF1 3464 120 - 1
UUCCAUCAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUUGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAACGUGAAGGUGGGUUUA
........((((((.(....(((((((.....)))))))(((((((.(((((((.(((..((((........))))....)))..))))))).)).....)))))......).)))))). ( -28.10)
>consensus
UUCCAUCAAAACCCUCAAAUUGAUUGAUCAACUCAAUCGGUUGUGCAUUUGAGUUUUGUGUUUCGCCAAGCAGAAGAAUUCAAUUAUUCAAAAGCCGAAAACAACGUGAAGGUGGGUUUA
........((((((.(.((((((((((.....))))))))))(.((.(((((((.(((..((((........))))....)))..))))))).)))...............).)))))). (-26.74 = -26.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:52 2006