| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,378,176 – 16,378,277 |
| Length | 101 |
| Max. P | 0.891976 |
| Location | 16,378,176 – 16,378,277 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.45 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -20.43 |
| Energy contribution | -20.11 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.891976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16378176 101 + 22407834 GC-UCGGUGGAU----GGGUUGACGAGUGGGUGGCGCUGGGCCCACGUGGGCUGGGACUUCCAGCUGAAGGCAAUGGCCAAA-----ACCAAACCAAACGUAAACGCAAAU ..-........(----(.(((.(((..(((((((.((...)))))).((((((((.....)))))....(((....)))...-----.)))..)))..))).))).))... ( -33.80) >DroSim_CAF1 54003 101 + 1 GC-UCGGUGGAU----GGGUUGACGAGUGGGUGGCGCCGGGCCCACGUGGGCUGGGACUUGCAGCUGAAGGCAAUGGCCAAA-----ACCAAACCAAACGUAAACGCAAAU ..-...(((..(----(.(((......(((.((((.((.(((((....))))).))..((((........))))..))))..-----.))).....))).))..))).... ( -34.70) >DroWil_CAF1 65984 96 + 1 AAUUGGGUGGAUAUGGGGGUUGG-GGUUGGGUGGUUAG--------------GGGUAACUGCAGCCAAAGGCAAUGACCAAAAACCAACCAAACCAAACGUAAACGUAAAU ..(((.((...((((..((((..-((((((.((((((.--------------((....))...(((...)))..))))))....)))))).))))...)))).)).))).. ( -30.20) >consensus GC_UCGGUGGAU____GGGUUGACGAGUGGGUGGCGCCGGGCCCACGUGGGCUGGGACUUGCAGCUGAAGGCAAUGGCCAAA_____ACCAAACCAAACGUAAACGCAAAU ................(.(((.(((..(((.((((.((.(((((....))))).)).......(((...)))....)))).............)))..))).))).).... (-20.43 = -20.11 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:47 2006