| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,374,299 – 16,374,404 |
| Length | 105 |
| Max. P | 0.995518 |
| Location | 16,374,299 – 16,374,404 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.78 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.93 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.995518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16374299 105 - 22407834 GUUGUUCCGGCUUUUCGCUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUUAACA-UACCCCUCCAAAA------CCGAAC-----AGCCC---UCCGCC (((((((.((.((((((((((((((((((.(((((..(((....))).))))).)))))))))))))).......-.........))))------))))))-----)))..---...... ( -33.39) >DroPse_CAF1 45015 106 - 1 GUGGUUCGGGCU-------G-CUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUUAACA-UACCCCCCUCAAACGGCAGCCAAAC-----UCCCCCUUUUCCCC (..(((..((((-------(-((((((((((.((......)).)))((((((((...........))))))))..-........))))).))))))).)))-----..)........... ( -25.30) >DroSim_CAF1 50168 98 - 1 GUUGUUCCGGCUUUUCGCUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUUAACA-UACCCCUCCGUAA------CCGAAC---------------CGCC ((.((((.((.....((((((((((((((.(((((..(((....))).))))).)))))))))))))).......-(((......))).------))))))---------------.)). ( -30.80) >DroEre_CAF1 50050 84 - 1 GUU-------------GCUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAGAAGGUAGCGCUUAACA-UACCCCUCGAUAU------CCGAGC-----AG-------C---- ...-------------(((((((((((((.(((((..(((....))).))))).)))))))))))))........-.....((((....------.)))).-----..-------.---- ( -27.70) >DroWil_CAF1 58512 104 - 1 GUGGCUUGG-------GAUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUAUUCUCUCCCCCUCA---A------CCACGCCUCAAUCCCUCACUUCACU ((((...((-------(((((((((((((.(((((..(((....))).))))).)))))))))).(((.................---.------...)))....))))).....)))). ( -26.60) >DroYak_CAF1 50501 101 - 1 GUUGUUUCGGCUUCUCGCUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUUAACA-UACCCCUCAAAAU------CCGAAC-----CU-------CGACA ((((.(((((.....((((((((((((((.(((((..(((....))).))))).)))))))))))))).......-.............------))))).-----..-------)))). ( -31.21) >consensus GUUGUUCCGGCU____GCUGCCUUUUGAUUUACUUUUAUUGGCAGAUUAAGUGCGUCAAAAGGUAGCGCUUAACA_UACCCCUCAAAAA______CCGAAC_____AC_______CCACC ................(((((((((((((.(((((..(((....))).))))).)))))))))))))..................................................... (-20.24 = -20.93 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:46 2006