Locus 5749

Sequence ID 2L_DroMel_CAF1
Location 16,373,094 – 16,373,208
Length 114
Max. P 0.560417
window9106

overview

Window 6

Location 16,373,094 – 16,373,208
Length 114
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 83.69
Mean single sequence MFE -25.67
Consensus MFE -18.06
Energy contribution -18.38
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.560417
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16373094 114 - 22407834
GAGAGUCGGAUUUGCAUAUUUGAGGGAAUAAUUUCCUCGAACAGG-UUUGGAAAAUGCUACAGACAAACCAUUUGGAAAGCUAAAAUUAGCUGGAGAAUGAAAUAUCGCUAGUGU--
.....(((((((((....(((((((((.....)))))))))))))-)))))...((((((..((.....(((((....(((((....)))))...))))).....))..))))))-- ( -26.00)
>DroSim_CAF1 48967 114 - 1
GAGAGUCGGAUUUGCAUAUUUGAGGGAAUAAUUUCCUCGAACAGG-UUUGGAAAAUGCUACAGACAAACCAUUUGGAAAGCUAAAAUUAGCUGGAGAAUAAAAUAUAGCUAGUGU--
.((..((.((........(((((((((.....)))))))))..((-((((..............))))))..)).))...))...((((((((............))))))))..-- ( -24.94)
>DroEre_CAF1 48929 93 - 1
GAGAGUCGGAUUUGCAUAUUUGAGGGAAUAAUUUCCUCGAACGGGCUUUAGAAAAUGCUAAAGACGCGCCAUUUGGACAGCUAAAAUUAGCUG------------------------
....(((.((...((...(((((((((.....))))))))).(.(((((((......)))))).).)))...)).)))(((((....))))).------------------------ ( -27.40)
>DroYak_CAF1 49255 116 - 1
GAGAGUCGGAUUUGCAUAUUUGAGGGAAUAAUUUCCUCGAACGGG-UUUGGAAAAUACUAAAGACAAACCAUUUGGAAAGCUAAAAUUAGCUGAAGAAGAAAGUAUCGCUUGUGUGU
......((.((..((...(((((((((.....)))))))))..((-((((..............)))))).(((....(((((....)))))...))).........))..)).)). ( -24.34)
>consensus
GAGAGUCGGAUUUGCAUAUUUGAGGGAAUAAUUUCCUCGAACAGG_UUUGGAAAAUGCUAAAGACAAACCAUUUGGAAAGCUAAAAUUAGCUGGAGAAUAAAAUAUCGCUAGUGU__
....(((...........(((((((((.....))))))))).....(((((......))))))))...((....))..(((((....)))))......................... (-18.06 = -18.38 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:45 2006