| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,370,645 – 16,370,753 |
| Length | 108 |
| Max. P | 0.945890 |
| Location | 16,370,645 – 16,370,753 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.13 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -7.42 |
| Energy contribution | -8.50 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.36 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16370645 108 + 22407834 AUUCAUUCGAACUUUUGGGUAUACCCUUGCAGGGGGUA-AUACCAUUUACAUUUAGUCUUUGCUACAUUCAAAAUAUUAAUAUAGAACUCCUUAUUUUAU-AAAAGUAAA ..........(((((((((((((((((.....))))).-))))).........((((....))))..................................)-))))))... ( -18.00) >DroSec_CAF1 46108 109 + 1 AUUCAUUCGAACUUUUGGGUAUACCCUAACAAAGGGUAUAUACCAUUUAUAUUUAGGCUUUGCUACAUACAAAAAAUUAAUAUAGAAUUCCUUGUUUUCU-AAAAGUAAU ..........(((((((((((((((((.....)))))))))....((((((((.....((((.......)))).....))))))))............))-))))))... ( -23.00) >DroSim_CAF1 45898 109 + 1 AUUCAUUCGAACUUUUGGGUAUACCCUUACAAAGGGGAUAUACCAUUUACAUUUAGACUUUGCUACACACAAAAAAUUAAUAUAGAAUUCUUUAUUUCCU-AAAAGUAAU .................(((((((((((....))))).))))))..((((.(((((..((((.......)))).....((((.((....)).))))..))-))).)))). ( -18.80) >DroEre_CAF1 43694 97 + 1 AUUCAUUCCAACUUUUUGGGAUACCCUUACAAGGGGUA-AUGUCAUUUUCAUUUACUCUUUGCAUUGGGCAAAA----------GAAAA--UGGGGUAAAAAAAAGUUGU ........(((((((((....((((((.....))))))-((.((((((((.(((.(((........))).))).----------)))))--))).))...))))))))). ( -27.20) >DroYak_CAF1 45926 92 + 1 AUUCAUUCGAACUUUUUGGAAUACCCUUCCAGGGGGAA-A-------------UACUCUUAGCUACAUACAAAA-AUUAAUAUGGAAAA--UAAGGUAAGA-GAUGUAAU ...........((((((((((.....))))))))))..-.-------------..((((((.((.((((.....-.....)))).....--..)).)))))-)....... ( -15.90) >consensus AUUCAUUCGAACUUUUGGGUAUACCCUUACAAGGGGUA_AUACCAUUUACAUUUAGUCUUUGCUACAUACAAAA_AUUAAUAUAGAAAUC_UUAUUUAAU_AAAAGUAAU ..........((((((.(((((.((((.....))))...)))))..............((((.......))))............................))))))... ( -7.42 = -8.50 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:42 2006