| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,368,960 – 16,369,062 |
| Length | 102 |
| Max. P | 0.537875 |
| Location | 16,368,960 – 16,369,062 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -31.47 |
| Consensus MFE | -20.16 |
| Energy contribution | -22.72 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16368960 102 - 22407834 GUAAACAAAAGCGAGUGUAACUUGAGAACAAAAUCGAUGUCGGGUUUCAUUUGUUGCCCCAAUGCUGAAGGAAGUGGGUGGUGCGGGUGGUUUUC------------------CAAAAGG .........((((((((.(((((((.(.(......).).))))))).))))))))((.(((.((((......))))..))).))(((......))------------------)...... ( -25.10) >DroSec_CAF1 44332 102 - 1 GUAAACAAAAGCGAGUGUAACUUGAGAACAAAAUCGAUGUCGGGUUUCAUUUGUUGCCCCACUGCUGAAGGAAGUGGGUGGUGCGGGUGGUUUUC------------------CAAAAGG ..((((...((((((((.(((((((.(.(......).).))))))).))))))))(((((((..((.(......).))..))).)))).))))..------------------....... ( -30.20) >DroSim_CAF1 44108 102 - 1 GUAAACAAAAGCGAGUGUAACUUGAGAACAAAAUCGAUGUCGGGUUUCAUUUGUUGCCCCACUGCUGAAGGAAGUGGGUGGUGCGGGUGUUUUUC------------------CAAAAGG ..((((...((((((((.(((((((.(.(......).).))))))).))))))))(((((((..((.(......).))..))).))))))))...------------------....... ( -30.20) >DroEre_CAF1 41964 102 - 1 GUAAACAAAGGCGAGUGUAACUUGAGUACAAAAUCGAUGUCGGGUUUCAUUUGCUGCCCCACUGCUGAAGGAAGUGGGUGGUGCGGGUGGUUUUC------------------CAAAAGG ..((((...((((((((.(((((((...(......)...))))))).))))))))(((((((..((.(......).))..))).)))).))))..------------------....... ( -30.60) >DroYak_CAF1 44171 102 - 1 GUAAACAAAGGCGAGUGUAACUCGAGAACAAAAUCGAUGUCGGGUUUCAUUUGCUGCCCCACUGCCGAAAGAAAUGGGUGGUGCGGGUGGUUUUU------------------CAGAAGG ..((((...((((((((.(((((((.(.(......).).))))))).))))))))(((((((..((.(......).))..))).)))).))))..------------------....... ( -36.40) >DroPer_CAF1 38727 110 - 1 GUAAACAAAAGCGCCUGAAACUUGAGAACAAAAUCGAUGUGGGGUUUCCUUCCUG---------GCGGGGGGAGGG-GGGGGGGGAGUGGUUACCCUUCCUGAAACGCCCCACCAAAAAG .....................((((........)))).(((((((((((((((..---------..)))))))).(-(((((((.........)))))))).....)))))))....... ( -36.30) >consensus GUAAACAAAAGCGAGUGUAACUUGAGAACAAAAUCGAUGUCGGGUUUCAUUUGUUGCCCCACUGCUGAAGGAAGUGGGUGGUGCGGGUGGUUUUC__________________CAAAAGG .........((((((((.(((((((.(.(......).).))))))).))))))))(((((((((((.(......).))))))).))))................................ (-20.16 = -22.72 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:39 2006