Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,352,596 – 16,352,704 |
Length | 108 |
Max. P | 0.798615 |
Location | 16,352,596 – 16,352,704 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.44 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -18.61 |
Energy contribution | -18.69 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16352596 108 - 22407834 CUACAUCGAUAGUCACAAAGUAUUGAAACGCCUAUCGAACUAUCGAGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUUUUUUUAGCAAAAUAUAAGCCGCAUCUC .....((((((((((........))).....)))))))......((((((((((..(((.....)))..))))))))--))........((............))..... ( -24.10) >DroSec_CAF1 26545 99 - 1 CUACAUCGAUAGUCACA-----UCGAUA---GUAUUGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGCAAAAUAUAAGCCGCAUCUC .......(((.......-----..((((---((.....))))))((((((((((..(((.....)))..))))))))--....-.....((.........)).))))).. ( -24.50) >DroSim_CAF1 27538 98 - 1 CUACAUCGAUAGUCACA-----UCGAUA---GUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGCAAAA-AUAAGGCGCAUCUC .......(((.(((((.-----..((((---((.....))))))((((((.......)))))).)))))((((.((.--.(((-((.....))))-)..))))))))).. ( -29.00) >DroEre_CAF1 26962 106 - 1 CUCCAUCGAUGGCCACCAAAUA--AAUC-GCCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUCAUUUUU-UUUUAGCAAAAUAUAAGCCGCAUCUC .....((((((((.........--....-))).)))))......((((((((((..(((.....)))..))))))))......-.....((.........)).))..... ( -26.12) >DroYak_CAF1 28187 106 - 1 CUUCAUCGAUAGCCGCAAAGUAGGAAAA-CCCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGUAAAAUAUAAGCCGCAUCUC .......(((.((.((...(((((....-.)))))...((((....((((((((..(((.....)))..))))))))--....-...)))).........)).))))).. ( -26.70) >consensus CUACAUCGAUAGUCACAAA_UAUCGAUA__CCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC__UUUU_UUUUAGCAAAAUAUAAGCCGCAUCUC .....(((((((...................)))))))........((((((((..(((.....)))..))))))))................................. (-18.61 = -18.69 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:36 2006