Locus 5741

Sequence ID 2L_DroMel_CAF1
Location 16,339,989 – 16,340,101
Length 112
Max. P 0.507806
window9095

overview

Window 5

Location 16,339,989 – 16,340,101
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 88.78
Mean single sequence MFE -24.70
Consensus MFE -18.42
Energy contribution -18.22
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.507806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16339989 112 - 22407834
UGA-----UUUGGCAAAGUGGAAAUUAAAUGAUAAACGGUCUAAUGUACCCAUUUAAUAUACUCGUUUGAGACAAAGAACCACUGCCAAAAUUGUGUAAAAGCGAAUAUCA-UUAAUG
(((-----(((((((..((((..((((((((......((((....).)))))))))))...(((....)))........))))))))))).((((......))))...)))-...... ( -22.70)
>DroSec_CAF1 13859 118 - 1
UGAUUACAUUUGGCAAAGUGGAAGUUAAAUGAUAAACGGUCUAAUGUACCCAUUUAAUAUACUCGUUUGAGACAAAGCACCACUGCCAAAAUUGUGUAAAAGCGAAUAGCAAAUAAUG
...((((((((((((..((((..((((((((......((((....).)))))))))))......((((......)))).))))))))))....))))))..((.....))........ ( -26.10)
>DroSim_CAF1 14486 118 - 1
UGAUUACAUUUGGCAAAGUGGAAGUUAAAUGAUAAACGGUCUAAUGUACCCAUUUAAUAUACUCGUUUGAGACAAAGCACCACUGCCAAAAUUGUGUAAAAGCGAAUAGCAAAUAAUG
...((((((((((((..((((..((((((((......((((....).)))))))))))......((((......)))).))))))))))....))))))..((.....))........ ( -26.10)
>DroEre_CAF1 14386 116 - 1
CGAUUACAUUUGGCGAAGUGAGAAUUAAAUGAAUGGUGGCCUAAUGUACCCAUUUAAUAUACUCGUUUGAGGAAGAGCACCACUGCCAAAAUUGUG-AAAAGCGUACAGCA-UUAAUG
...(((((((((((..((((.........(((((((..((.....))..))))))).....(((....))).........))))))))))..))))-)...((.....)).-...... ( -24.70)
>DroYak_CAF1 15444 116 - 1
UGAUUACAUUUGGCAAAGUGAGAAUUAAAUGAAUGAUGGUCUAAUGUACCCAUUUAAUAUACUCGUUUGAGGAAAAGCUCCACUGCCAAAAUUGUG-AAAAGCGAAUAGCA-UUAAUG
...(((((((((((((((((((.((((((((......((((....).)))))))))))...)))))))..(((.....)))..)))))))..))))-)...((.....)).-...... ( -23.90)
>consensus
UGAUUACAUUUGGCAAAGUGGAAAUUAAAUGAUAAACGGUCUAAUGUACCCAUUUAAUAUACUCGUUUGAGACAAAGCACCACUGCCAAAAUUGUGUAAAAGCGAAUAGCA_UUAAUG
........(((((((..((((..((((((((....(((......)))...))))))))...(((....)))........)))))))))))...........((.....))........ (-18.42 = -18.22 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:34 2006