Locus 5740

Sequence ID 2L_DroMel_CAF1
Location 16,338,173 – 16,338,268
Length 95
Max. P 0.500000
window9094

overview

Window 4

Location 16,338,173 – 16,338,268
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 89.26
Mean single sequence MFE -15.06
Consensus MFE -12.68
Energy contribution -12.96
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -1.29
Structure conservation index 0.84
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16338173 95 + 22407834
UCAAAAAACCCUCUUAUCAACAAUAAAGUGCUCACUUGCCAAUAGCAGGUGGAGAACUAAUAUUUUAAAUGAAAAUUUUGACAGCUUGUCUAAAA
..........................(((.(((((((((.....)))))).))).))).................(((.(((.....))).))). ( -14.40)
>DroSec_CAF1 12048 95 + 1
UCUAAAAACCCUCUUAUCAACAAUAGAGUGCUCACUUGCAACUAGCAGGUGAAAAACUAAUAUUUUAAAUGAAAAUUUUGACAGCUUGUCUAAAA
.......................((((..((((((((((.....))))))))..............((((....)))).....))...))))... ( -15.50)
>DroSim_CAF1 12675 95 + 1
UCUAAAAACCCUCUUAUCAACAAUAGAGUGCUCACUUGCCACUAGCAGGUGAAAAACUAAUAUUUUAAAUGAAAAUUUUGACAGCUUGUCUAAAA
.......................((((..((((((((((.....))))))))..............((((....)))).....))...))))... ( -15.00)
>DroEre_CAF1 12546 94 + 1
UCUAGAAAUCCUCUUAUCAACAACAGAGUGUUCACUUGCAAAUGGCAGGUGAAAAGCUAAU-UUUUAAAUGAAAAUUUUGACAGCUGGUCUAAAA
..((((...((..((.((((......(((.(((((((((.....)))))))))..)))(((-((((....))))))))))).))..))))))... ( -19.10)
>DroYak_CAF1 13627 93 + 1
UCUACUCUUCCUCUUAUCAACGACA--AUGUUCACUUGCCAAUAGCACGUGAAAAACUAAUAUUUUAAAUGAAAAUUUUGACAGCUGGUCUAAAA
.....................(((.--.(((((((.(((.....))).))))..............((((....))))..)))....)))..... ( -11.30)
>consensus
UCUAAAAACCCUCUUAUCAACAAUAGAGUGCUCACUUGCCAAUAGCAGGUGAAAAACUAAUAUUUUAAAUGAAAAUUUUGACAGCUUGUCUAAAA
..........................(((..((((((((.....))))))))...))).................(((.(((.....))).))). (-12.68 = -12.96 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:33 2006