Locus 574

Sequence ID 2L_DroMel_CAF1
Location 1,767,562 – 1,767,664
Length 102
Max. P 0.536550
window946

overview

Window 6

Location 1,767,562 – 1,767,664
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 84.76
Mean single sequence MFE -33.59
Consensus MFE -19.94
Energy contribution -21.00
Covariance contribution 1.06
Combinations/Pair 1.12
Mean z-score -3.21
Structure conservation index 0.59
SVM decision value 0.01
SVM RNA-class probability 0.536550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1767562 102 + 22407834
U---CCUUUUCUUCCUCCAGCCACAUCCACAUGAAUAAAUUCCAAUGGCCAAUUUUAGGAA-AACUUUGUGGCAUGUGGAAGGAAGGGAAGG---GGUGGUUUACACGU
(---((((..((((((....(((((((((((........((((..............))))-.....))))).)))))).))))))..))))---)(((.....))).. ( -37.66)
>DroSec_CAF1 24592 100 + 1
U---CCUUUU---CCUCCAGCCACAUCCACAUGAAUAAAUUCCGAAGGCCAAUUUGGGGAAAAACUUUGUGGCAUGUGGAAGGCAGGGAAAG---GGUGGUUUACACGU
.---((((((---(((((..(((((((((((........(((((((......)))))))........))))).))))))..)).))))))))---)(((.....))).. ( -41.09)
>DroSim_CAF1 26898 99 + 1
U---CCUUUU---UCUCCAGCCAUAUCCACAUGAAUAAAUUCCAAUGGCCAAUUUUGGGAA-AACUUUGUGGCAUGUGGAAGGCAGGGAAAG---GGUGGUUUACACGU
.---(((((.---.((((..(((((((((((........((((((.........)))))).-.....))))).))))))..)).))..))))---)(((.....))).. ( -34.94)
>DroEre_CAF1 24395 105 + 1
CCUUACUUUUCUUCCUCCAGCCACAUCCACAUGAAUAAAUUCCAAUGGCCAAUUUUGGACA-AACUUUGUGGCAUGUGGAAGGAAGGGAAAG---GGUGGUUUACACGU
((((...(..((((((....(((((((((((.........(((((.........)))))..-.....))))).)))))).))))))..))))---)(((.....))).. ( -35.39)
>DroYak_CAF1 33566 102 + 1
U---CCAUUUCUUUCUCCAGCCACAUCCACAUGAAUAAAUUCCAAUGGCCAAUUUUGGACA-AACUUUGUGGCAUGUCGAAGGAAGGGAAAG---GGUGCUUUACACGU
(---((.((((((((..((((((((.(((...(((....)))...)))(((....)))...-.....)))))).))..)))))))))))...---.(((.....))).. ( -27.30)
>DroAna_CAF1 23805 100 + 1
----CCUUCUCCUCCCUCUGCCCCAGCCACUCAAAUAAAUUCCAAUGGCCAAUUUUGGACA-AACUUUCUGGCAUGUGGC----AGGGAAAAGUUGGUGGCUUACACGU
----...........(((((((.((((((...........(((((.........)))))..-.......)))).)).)))----))))........(((.....))).. ( -25.15)
>consensus
U___CCUUUUCUUCCUCCAGCCACAUCCACAUGAAUAAAUUCCAAUGGCCAAUUUUGGAAA_AACUUUGUGGCAUGUGGAAGGAAGGGAAAG___GGUGGUUUACACGU
.............(((((..(((((((((((.........(((((.........)))))........))))).))))))..)).))).........(((.....))).. (-19.94 = -21.00 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:02 2006