Locus 5739

Sequence ID 2L_DroMel_CAF1
Location 16,337,412 – 16,337,528
Length 116
Max. P 0.941991
window9093

overview

Window 3

Location 16,337,412 – 16,337,528
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 84.40
Mean single sequence MFE -35.42
Consensus MFE -28.72
Energy contribution -28.68
Covariance contribution -0.04
Combinations/Pair 1.35
Mean z-score -2.14
Structure conservation index 0.81
SVM decision value 1.32
SVM RNA-class probability 0.941991
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16337412 116 + 22407834
AACGUUCGAGAUGGGAUUUCUUUUGAAUAUAAUUUUCUGGAAGGGGAUAGUUAUCGAAGGAUGAAAACGGUGGAACAGAUUGAACAAUCAGCGGUUGCACAGGCAGCUGCAACACC
..(((((..(((((.((..((((((((.......)))..)))))..))..)))))...))))).....((((.....((((....)))).((((((((....))))))))..)))) ( -34.70)
>DroSec_CAF1 11290 116 + 1
AACGUUCGAGAUGGGAUUUCUUUUGAAUAUAAUUUUCUGGAAAGGGAUAGUUAUCAAAAGAUGGACACGGUGGAACCGAUUGAACGAUUAGCGGUUGCACGGGCAGCUGCAACACC
..(((((((....(..(.((((((((.((....(..((....))..)....)))))))))).)..).(((.....))).)))))))....((((((((....))))))))...... ( -37.00)
>DroSim_CAF1 11917 116 + 1
AACGUUCGAGAUGGGAUUUCUUUUGAAUAUAAUUUUCUGGAAAGGGAUAGUUAUCAAAAGAUGGACACGGUGGAACCGAUUGAACGAUUAGCGGUUGCACGGGCAGCUGCAACACC
..(((((((....(..(.((((((((.((....(..((....))..)....)))))))))).)..).(((.....))).)))))))....((((((((....))))))))...... ( -37.00)
>DroEre_CAF1 11791 116 + 1
AACGUUCGAGUUGAGAUUUCCUUUGAAGAGCAUUUUCCGGUGGGGCAUAGCCAUCGAAGGACGGACACGGUGGAACCGACUGCACAAUCAGCGGUUGCACAGGUAGCUGCAACACC
...((((.....(((.....)))....)))).......((((..(((..(((.((....))((....))(((.(((((.(((......)))))))).))).)))...)))..)))) ( -35.90)
>DroYak_CAF1 12881 107 + 1
AACGUUCGAGAUGAGAUUUCUUUUGAAGAACAUUUUCCUGUAGGGGA---------AAAGAGGGAUAAGGUGGAAACGACUGAACAAUCAGCGGCUGCACAGGCAGCUGCAACACC
...((((.....(((....))).....)))).(((((((....))))---------)))((..(...((.((....)).))...)..)).((((((((....))))))))...... ( -32.50)
>consensus
AACGUUCGAGAUGGGAUUUCUUUUGAAUAUAAUUUUCUGGAAGGGGAUAGUUAUCAAAAGAUGGACACGGUGGAACCGAUUGAACAAUCAGCGGUUGCACAGGCAGCUGCAACACC
...(((((..........((((((((.......(((((....)))))......)))))))))))))..((((.....((((....)))).((((((((....))))))))..)))) (-28.72 = -28.68 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:32 2006