Locus 5735

Sequence ID 2L_DroMel_CAF1
Location 16,335,946 – 16,336,041
Length 95
Max. P 0.500000
window9086

overview

Window 6

Location 16,335,946 – 16,336,041
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 83.26
Mean single sequence MFE -24.24
Consensus MFE -17.42
Energy contribution -16.26
Covariance contribution -1.16
Combinations/Pair 1.31
Mean z-score -1.53
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16335946 95 + 22407834
ACUGGACUGCUGACCCCACUUCGGUUUGGGGUAUAAGCUAUUUCAUCUGGAUUACUUUGGUGAUUUUUGUAAUGAUUGGUGGUAUGCCUUUCAUU
..((((..(((.(((((((....))..)))))...)))...))))...(((((((....)))))))....(((((..(((.....)))..))))) ( -27.00)
>DroSec_CAF1 9866 92 + 1
ACUGGACUGCUGACCCCACUUCGGUUUGGGGUAUAAGCCACUUCAUCUGGAUUACUUUGGUGAUUUUUGUAAUGAUUGG---UCUGCUUUUCAUU
..((((..((..(((((((....))..)))))....((((..((((..(((((((....))))))).....)))).)))---)..))..)))).. ( -24.80)
>DroSim_CAF1 10493 92 + 1
ACUGGACUGCUGACCCCACUUCGGUUUGGGGUAUAAGCCACUUCAUCUGGAUUACUUUGGUGAUUUUUGUAAUGAUUGG---UCUGCUUUUCAUU
..((((..((..(((((((....))..)))))....((((..((((..(((((((....))))))).....)))).)))---)..))..)))).. ( -24.80)
>DroEre_CAF1 10362 92 + 1
ACUGGAGUGCUGAUGCCACUUCGAUUUGGGGUAUAAGCCGUAUCAUUCAGAUUAUUGCGAUGUUUUUUGUUAUGAUCGG---UAUGCCGUUCAUU
..((((((((....).)))))))......(((((..((((.(((((.((((..((......))..))))..))))))))---))))))....... ( -24.30)
>DroYak_CAF1 11469 92 + 1
GUUGGAGAGCUGACACCACUUCGAGUUGGGGUAUAAGCCGUUUCAUUGAAAUUAUGGUUGUGAUUUUUGUAGUGAUCGG---UCUGCCUUUCAUU
((..(....)..)).(((........)))((((...((((..(((((((((((((....))))))))...))))).)))---).))))....... ( -20.30)
>consensus
ACUGGACUGCUGACCCCACUUCGGUUUGGGGUAUAAGCCAUUUCAUCUGGAUUACUUUGGUGAUUUUUGUAAUGAUUGG___UCUGCCUUUCAUU
..((((..((..((((((........)))))).....(((..((((..(((((((....))))))).....)))).)))......))..)))).. (-17.42 = -16.26 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:24 2006